Wall clock time and date at job start Sun Mar 29 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.89456 * 2 1 4 4 C 1.54992 * 110.83181 * 123.53780 * 2 1 3 5 5 C 1.54286 * 103.84015 * 155.07818 * 4 2 1 6 6 C 1.51454 * 106.84687 * 337.24095 * 5 4 2 7 7 C 1.33120 * 126.34080 * 179.52744 * 6 5 4 8 8 C 1.46955 * 119.99969 * 179.68685 * 7 6 5 9 9 O 1.21663 * 119.99991 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99955 * 179.72614 * 8 7 6 11 11 C 1.36819 * 119.99964 * 180.27514 * 10 8 7 12 12 H 1.08001 * 119.99790 * 0.02562 * 11 10 8 13 13 C 1.39073 * 119.99894 * 179.97438 * 11 10 8 14 14 N 1.31353 * 119.99961 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00172 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99626 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00146 * 15 13 11 18 18 H 1.48507 * 109.46904 * 329.99968 * 15 13 11 19 19 C 1.51847 * 107.31808 * 359.26085 * 6 5 4 20 20 H 1.09000 * 109.47544 * 182.09810 * 1 2 3 21 21 H 1.09008 * 109.46743 * 302.09323 * 1 2 3 22 22 H 1.08997 * 109.46950 * 62.09335 * 1 2 3 23 23 H 1.08998 * 110.57232 * 273.86132 * 4 2 1 24 24 H 1.09005 * 110.56926 * 36.58238 * 4 2 1 25 25 H 1.08989 * 110.10272 * 217.83097 * 5 4 2 26 26 H 1.08997 * 109.86901 * 96.51854 * 5 4 2 27 27 H 1.08001 * 120.00292 * 359.68257 * 7 6 5 28 28 H 0.97000 * 119.99736 * 0.26961 * 10 8 7 29 29 H 0.96996 * 119.99794 * 180.02562 * 14 13 11 30 30 H 1.08992 * 110.44082 * 142.76767 * 19 6 5 31 31 H 1.08996 * 110.44396 * 265.29964 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0812 -0.8003 1.2074 5 6 3.4822 -1.2501 0.7435 6 6 3.4694 -1.2336 -0.7709 7 6 4.4855 -1.5467 -1.5718 8 6 4.3163 -1.4887 -3.0305 9 8 3.2474 -1.1549 -3.5060 10 7 5.3467 -1.8004 -3.8413 11 6 5.1908 -1.7409 -5.1993 12 1 4.2422 -1.4438 -5.6214 13 6 6.2543 -2.0620 -6.0360 14 7 6.1045 -2.0054 -7.3398 15 14 7.8953 -2.5753 -5.3059 16 1 7.9169 -4.0489 -5.1240 17 1 8.9923 -2.1733 -6.2225 18 1 8.0811 -1.9114 -3.9905 19 6 2.0808 -0.8001 -1.2065 20 1 -0.3634 -1.0269 0.0376 21 1 -0.3633 0.5460 0.8707 22 1 -0.3633 0.4810 -0.9081 23 1 2.1532 -0.1630 2.0887 24 1 1.4515 -1.6661 1.4127 25 1 3.6904 -2.2577 1.1032 26 1 4.2363 -0.5575 1.1172 27 1 5.4343 -1.8434 -1.1497 28 1 6.1989 -2.0668 -3.4621 29 1 6.8461 -2.2298 -7.9233 30 1 2.1402 -0.1642 -2.0897 31 1 1.4548 -1.6702 -1.4040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308287319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:20 Heat of formation + Delta-G solvation = -61.304235 kcal Electronic energy + Delta-G solvation = -13405.111704 eV Core-core repulsion = 11071.044722 eV Total energy + Delta-G solvation = -2334.066982 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51395 -38.97506 -36.05646 -33.84148 -33.44705 -30.68419 -28.33772 -26.79163 -24.71250 -21.63984 -21.01333 -20.72755 -18.86053 -17.76089 -16.79389 -16.55834 -15.74640 -15.43020 -14.97879 -14.64114 -14.40254 -14.23268 -13.94273 -13.45775 -13.01438 -12.90377 -12.49322 -12.45064 -12.17990 -11.97998 -11.73609 -11.56041 -11.38542 -11.33185 -10.30200 -10.25345 -9.91409 -8.46188 -6.02988 0.58887 1.28586 1.36696 1.42613 2.20039 2.43845 2.95145 3.22751 3.62531 3.82333 4.07316 4.20139 4.33769 4.50949 4.55490 4.67819 4.73858 4.91714 4.96492 5.04308 5.14537 5.18991 5.30436 5.36645 5.49126 5.55098 5.58324 5.75537 5.98429 6.57333 6.85031 7.37759 7.96474 8.71465 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061259 B = 0.006860 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.964667 B = 4080.903317 C = 4487.915632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.092 4.092 6 C -0.049 4.049 7 C -0.218 4.218 8 C 0.473 3.527 9 O -0.625 6.625 10 N -0.583 5.583 11 C -0.331 4.331 12 H 0.056 0.944 13 C -0.013 4.013 14 N -0.930 5.930 15 Si 0.966 3.034 16 H -0.255 1.255 17 H -0.270 1.270 18 H -0.234 1.234 19 C -0.100 4.100 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.043 0.957 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.153 0.847 28 H 0.390 0.610 29 H 0.281 0.719 30 H 0.055 0.945 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 0.634 20.190 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.128 4.128 6 C -0.052 4.052 7 C -0.238 4.238 8 C 0.265 3.735 9 O -0.514 6.514 10 N -0.222 5.222 11 C -0.460 4.460 12 H 0.074 0.926 13 C -0.213 4.213 14 N -0.570 5.570 15 Si 0.785 3.215 16 H -0.179 1.179 17 H -0.195 1.195 18 H -0.158 1.158 19 C -0.137 4.137 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.062 0.938 23 H 0.111 0.889 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.171 0.829 28 H 0.225 0.775 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.131 0.825 19.642 19.774 hybrid contribution 0.829 -0.273 -0.902 1.255 sum -1.302 0.553 18.740 18.794 Atomic orbital electron populations 1.21724 0.93922 1.02133 1.01919 1.22192 0.96375 0.98860 0.94233 0.90738 1.22454 0.94871 1.00147 0.97363 1.21359 0.99371 1.03616 0.88493 1.23171 0.94139 0.90668 0.97233 1.21970 1.01415 1.10213 0.90227 1.18954 0.83978 0.82154 0.88454 1.90584 1.28448 1.53933 1.78387 1.41946 1.13015 1.61637 1.05584 1.19049 1.00037 1.45515 0.81434 0.92598 1.26160 1.03187 0.96587 0.95334 1.69771 1.34705 1.48201 1.04279 0.85355 0.76478 0.79928 0.79743 1.17939 1.19517 1.15785 1.21693 0.93503 0.99840 0.98646 0.92445 0.90595 0.93798 0.88913 0.90536 0.88480 0.88547 0.82904 0.77480 0.90925 0.92650 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.28 71.98 0.67 -2.20 16 2 C -0.10 -2.31 3.53 -9.47 -0.03 -2.35 16 3 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.11 -1.94 6.32 31.71 0.20 -1.74 16 5 C -0.09 -1.82 6.62 30.52 0.20 -1.62 16 6 C -0.05 -1.54 6.15 -16.99 -0.10 -1.65 16 7 C -0.22 -7.80 9.94 23.41 0.23 -7.57 16 8 C 0.47 23.48 7.71 86.53 0.67 24.14 16 9 O -0.63 -36.53 13.33 -4.23 -0.06 -36.58 16 10 N -0.58 -29.61 5.08 -310.42 -1.58 -31.18 16 11 C -0.33 -20.23 10.16 84.12 0.85 -19.37 16 12 H 0.06 4.03 7.38 -2.91 -0.02 4.01 16 13 C -0.01 -0.77 5.50 84.96 0.47 -0.30 16 14 N -0.93 -56.99 13.95 21.68 0.30 -56.69 16 15 Si 0.97 39.97 27.74 68.60 1.90 41.88 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.23 -8.36 6.52 99.48 0.65 -7.71 16 19 C -0.10 -3.38 4.87 30.86 0.15 -3.23 16 20 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 21 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.23 8.02 -2.38 -0.02 1.21 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.39 16.55 5.74 -92.71 -0.53 16.02 16 29 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.05 2.38 6.27 -2.39 -0.01 2.36 16 31 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 Total: -1.00 -75.73 259.69 4.40 -71.33 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.53 Total: 27.14 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 3.30 Total: -15.88 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.27 Total: -87.87 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.06 Total: -36.58 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.90 Total: 41.88 kcal Total: -75.73 4.40 -71.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308287319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.025 kcal (2) G-P(sol) polarization free energy of solvation -75.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds