Wall clock time and date at job start Sun Mar 29 2020 21:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33118 * 120.00214 * 2 1 4 4 C 1.50704 * 119.99925 * 179.97438 * 3 2 1 5 5 C 1.46953 * 120.00000 * 0.02562 * 3 2 1 6 6 O 1.21657 * 120.00286 * 8.75196 * 5 3 2 7 7 N 1.34781 * 119.99765 * 188.75991 * 5 3 2 8 8 C 1.36816 * 120.00232 * 5.93311 * 7 5 3 9 9 H 1.07998 * 120.00063 * 44.33469 * 8 7 5 10 10 C 1.39073 * 119.99780 * 224.33978 * 8 7 5 11 11 N 1.31353 * 119.99721 * 194.03919 * 10 8 7 12 12 Si 1.86800 * 120.00433 * 14.03990 * 10 8 7 13 13 H 1.48497 * 109.47259 * 95.50137 * 12 10 8 14 14 H 1.48499 * 109.47463 * 215.50732 * 12 10 8 15 15 H 1.48500 * 109.46952 * 335.50364 * 12 10 8 16 16 C 1.46503 * 119.99584 * 185.93531 * 7 5 3 17 17 C 1.53002 * 117.49969 * 16.77042 * 16 7 5 18 18 C 1.52995 * 117.49925 * 308.14802 * 16 7 5 19 19 H 1.08996 * 109.46769 * 59.99519 * 1 2 3 20 20 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47029 * 299.99946 * 1 2 3 22 22 H 1.08001 * 119.99584 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47309 * 96.53491 * 4 3 2 24 24 H 1.09003 * 109.46976 * 216.52874 * 4 3 2 25 25 H 1.08993 * 109.47591 * 336.52900 * 4 3 2 26 26 H 0.97001 * 119.99682 * 179.97438 * 11 10 8 27 27 H 1.08996 * 115.54926 * 162.47977 * 16 7 5 28 28 H 1.09001 * 117.49746 * 0.02562 * 17 16 7 29 29 H 1.09003 * 117.49678 * 145.01799 * 17 16 7 30 30 H 1.09003 * 117.49907 * 214.97785 * 18 16 7 31 31 H 1.08998 * 117.50117 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 6 3.6797 1.1527 0.0006 5 6 1.4379 2.4255 0.0006 6 8 0.2320 2.4317 0.1613 7 7 2.1000 3.5859 -0.1772 8 6 3.4345 3.5729 -0.4787 9 1 3.8143 2.8836 -1.2183 10 6 4.3019 4.4472 0.1673 11 7 5.5143 4.6356 -0.3017 12 14 3.7429 5.3537 1.7020 13 1 4.1830 4.6055 2.9068 14 1 4.3392 6.7136 1.7185 15 1 2.2619 5.4627 1.7006 16 6 1.3907 4.8612 -0.0475 17 6 0.0348 4.8466 0.6612 18 6 0.1035 5.0390 -0.8551 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.0469 -0.9354 -0.0004 23 1 4.0434 1.2694 -1.0203 24 1 4.0428 1.9787 0.6123 25 1 4.0428 0.2103 0.4102 26 1 6.1191 5.2457 0.1486 27 1 2.0225 5.7384 0.0921 28 1 -0.3293 3.8881 1.0313 29 1 -0.2256 5.7143 1.2674 30 1 -0.1118 6.0332 -1.2465 31 1 -0.2155 4.2073 -1.4832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308309503.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:27 Heat of formation + Delta-G solvation = 41.910215 kcal Electronic energy + Delta-G solvation = -14482.017950 eV Core-core repulsion = 12152.426682 eV Total energy + Delta-G solvation = -2329.591267 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.59747 -36.13228 -34.60215 -33.28192 -31.67460 -29.10765 -25.42591 -23.46470 -22.90254 -21.64192 -20.39050 -18.45632 -16.65517 -15.80138 -14.99574 -14.23916 -14.02333 -13.62643 -13.42194 -13.15541 -12.67898 -12.15498 -11.96727 -11.93603 -11.54541 -11.20391 -11.11723 -10.92494 -10.64891 -10.46163 -9.85171 -9.70137 -9.40577 -8.85329 -8.24512 -8.10508 -7.41671 -6.49673 -4.11844 2.24766 3.09446 3.21776 3.29646 4.11244 4.14780 4.34028 4.75395 4.99287 5.55659 5.71454 5.74092 5.80490 5.92779 6.07697 6.22465 6.35260 6.41841 6.46210 6.56346 6.70307 6.74499 6.82268 7.07583 7.11245 7.26299 7.44285 7.57333 8.05523 8.25290 8.92440 9.31457 9.65379 10.57871 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.016213 C = 0.011840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.813670 B = 1726.558146 C = 2364.362138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.136 4.136 3 C -0.136 4.136 4 C -0.105 4.105 5 C 0.511 3.489 6 O -0.584 6.584 7 N -0.431 5.431 8 C -0.337 4.337 9 H 0.115 0.885 10 C 0.065 3.935 11 N -0.862 5.862 12 Si 0.846 3.154 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.227 1.227 16 C 0.078 3.922 17 C -0.201 4.201 18 C -0.194 4.194 19 H 0.066 0.934 20 H 0.035 0.965 21 H 0.076 0.924 22 H 0.109 0.891 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.030 0.970 26 H 0.276 0.724 27 H 0.116 0.884 28 H 0.137 0.863 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -2.770 1.576 5.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.161 4.161 5 C 0.304 3.696 6 O -0.472 6.472 7 N -0.149 5.149 8 C -0.464 4.464 9 H 0.133 0.867 10 C -0.143 4.143 11 N -0.497 5.497 12 Si 0.671 3.329 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.150 1.150 16 C -0.027 4.027 17 C -0.238 4.238 18 C -0.232 4.232 19 H 0.085 0.915 20 H 0.054 0.946 21 H 0.095 0.905 22 H 0.127 0.873 23 H 0.086 0.914 24 H 0.120 0.880 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.171 -2.616 1.653 6.026 hybrid contribution 0.253 0.674 0.656 0.974 sum -4.918 -1.942 2.309 5.770 Atomic orbital electron populations 1.20797 0.92629 0.99056 1.03567 1.23268 0.96447 0.96273 0.99667 1.21582 0.97020 0.92854 1.02427 1.21287 0.90661 1.01195 1.02979 1.18509 0.86623 0.84611 0.79812 1.90474 1.14511 1.87173 1.55018 1.43010 1.09165 1.02011 1.60700 1.19419 0.80055 1.24195 1.22751 0.86735 1.25475 0.94941 0.96557 0.97312 1.69677 1.06909 1.34630 1.38439 0.87539 0.82255 0.79394 0.83718 1.20309 1.20797 1.14992 1.22058 0.87363 0.89546 1.03716 1.23777 1.00798 1.04510 0.94717 1.23146 1.03923 1.01413 0.94744 0.91547 0.94621 0.90548 0.87260 0.91373 0.88030 0.95100 0.91415 0.86651 0.84523 0.90877 0.89979 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 8.46 36.00 0.30 -1.49 16 2 C -0.14 -2.45 9.95 -36.09 -0.36 -2.81 16 3 C -0.14 -2.83 5.92 -102.87 -0.61 -3.44 16 4 C -0.11 -2.12 8.09 36.01 0.29 -1.83 16 5 C 0.51 11.87 7.30 -12.73 -0.09 11.77 16 6 O -0.58 -13.62 8.89 5.23 0.05 -13.57 16 7 N -0.43 -10.32 2.45 -109.11 -0.27 -10.58 16 8 C -0.34 -8.49 6.35 -15.02 -0.10 -8.59 16 9 H 0.12 3.02 5.49 -52.49 -0.29 2.73 16 10 C 0.06 1.65 5.05 -17.45 -0.09 1.56 16 11 N -0.86 -23.04 13.95 55.50 0.77 -22.27 16 12 Si 0.85 19.21 26.28 -169.99 -4.47 14.74 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.23 -4.96 4.22 56.52 0.24 -4.72 16 16 C 0.08 1.74 4.01 -67.93 -0.27 1.47 16 17 C -0.20 -4.10 9.19 -26.73 -0.25 -4.34 16 18 C -0.19 -3.87 9.87 -26.73 -0.26 -4.14 16 19 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 20 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.08 1.42 6.99 -51.93 -0.36 1.06 16 22 H 0.11 1.68 8.01 -52.49 -0.42 1.26 16 23 H 0.07 1.40 6.59 -51.93 -0.34 1.06 16 24 H 0.10 2.31 5.65 -51.93 -0.29 2.02 16 25 H 0.03 0.53 7.99 -51.93 -0.41 0.12 16 26 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.12 2.56 4.91 -51.93 -0.25 2.31 16 28 H 0.14 3.02 5.24 -52.06 -0.27 2.75 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.96 7.56 -51.93 -0.39 1.57 16 LS Contribution 242.84 15.07 3.66 3.66 Total: -1.00 -26.61 242.84 -5.68 -32.29 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.00 Total: 7.57 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.43 Total: -11.83 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.51 Total: -32.85 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.05 Total: -13.57 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.47 Total: 14.74 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.61 -5.68 -32.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308309503.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.197 kcal (2) G-P(sol) polarization free energy of solvation -26.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds