Wall clock time and date at job start Sun Mar 29 2020 21:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33118 * 120.00214 * 2 1 4 4 C 1.50704 * 119.99925 * 179.97438 * 3 2 1 5 5 C 1.46953 * 120.00000 * 0.02562 * 3 2 1 6 6 O 1.21657 * 120.00286 * 8.75196 * 5 3 2 7 7 N 1.34781 * 119.99765 * 188.75991 * 5 3 2 8 8 C 1.36816 * 120.00232 * 5.93311 * 7 5 3 9 9 H 1.07998 * 120.00063 * 44.33469 * 8 7 5 10 10 C 1.39073 * 119.99780 * 224.33978 * 8 7 5 11 11 N 1.31353 * 119.99721 * 194.03919 * 10 8 7 12 12 Si 1.86800 * 120.00433 * 14.03990 * 10 8 7 13 13 H 1.48497 * 109.47259 * 95.50137 * 12 10 8 14 14 H 1.48499 * 109.47463 * 215.50732 * 12 10 8 15 15 H 1.48500 * 109.46952 * 335.50364 * 12 10 8 16 16 C 1.46503 * 119.99584 * 185.93531 * 7 5 3 17 17 C 1.53002 * 117.49969 * 16.77042 * 16 7 5 18 18 C 1.52995 * 117.49925 * 308.14802 * 16 7 5 19 19 H 1.08996 * 109.46769 * 59.99519 * 1 2 3 20 20 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47029 * 299.99946 * 1 2 3 22 22 H 1.08001 * 119.99584 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47309 * 96.53491 * 4 3 2 24 24 H 1.09003 * 109.46976 * 216.52874 * 4 3 2 25 25 H 1.08993 * 109.47591 * 336.52900 * 4 3 2 26 26 H 0.97001 * 119.99682 * 179.97438 * 11 10 8 27 27 H 1.08996 * 115.54926 * 162.47977 * 16 7 5 28 28 H 1.09001 * 117.49746 * 0.02562 * 17 16 7 29 29 H 1.09003 * 117.49678 * 145.01799 * 17 16 7 30 30 H 1.09003 * 117.49907 * 214.97785 * 18 16 7 31 31 H 1.08998 * 117.50117 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 6 3.6797 1.1527 0.0006 5 6 1.4379 2.4255 0.0006 6 8 0.2320 2.4317 0.1613 7 7 2.1000 3.5859 -0.1772 8 6 3.4345 3.5729 -0.4787 9 1 3.8143 2.8836 -1.2183 10 6 4.3019 4.4472 0.1673 11 7 5.5143 4.6356 -0.3017 12 14 3.7429 5.3537 1.7020 13 1 4.1830 4.6055 2.9068 14 1 4.3392 6.7136 1.7185 15 1 2.2619 5.4627 1.7006 16 6 1.3907 4.8612 -0.0475 17 6 0.0348 4.8466 0.6612 18 6 0.1035 5.0390 -0.8551 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.0469 -0.9354 -0.0004 23 1 4.0434 1.2694 -1.0203 24 1 4.0428 1.9787 0.6123 25 1 4.0428 0.2103 0.4102 26 1 6.1191 5.2457 0.1486 27 1 2.0225 5.7384 0.0921 28 1 -0.3293 3.8881 1.0313 29 1 -0.2256 5.7143 1.2674 30 1 -0.1118 6.0332 -1.2465 31 1 -0.2155 4.2073 -1.4832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308309503.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:27 Heat of formation + Delta-G solvation = 26.937174 kcal Electronic energy + Delta-G solvation = -14482.667229 eV Core-core repulsion = 12152.426682 eV Total energy + Delta-G solvation = -2330.240547 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.33908 -37.79126 -36.38293 -34.93775 -33.54862 -30.64029 -27.26079 -25.07994 -24.59447 -23.25003 -22.04841 -20.30191 -18.40550 -17.54053 -16.74595 -15.98027 -15.77462 -15.26959 -15.11616 -14.72844 -14.39757 -13.81894 -13.68144 -13.60742 -13.18577 -12.89353 -12.75842 -12.60721 -12.19372 -12.05474 -11.63891 -11.41031 -11.11336 -10.72555 -9.91255 -9.75311 -9.19742 -8.43616 -6.07449 0.66397 1.27732 1.39104 1.47697 2.25384 2.41068 2.62564 2.96179 3.24050 3.93009 4.05563 4.22347 4.29084 4.31600 4.56727 4.80080 4.82646 4.83314 4.95775 5.04403 5.08413 5.14271 5.26937 5.44524 5.52636 5.61158 5.75838 5.97969 6.16100 6.34048 7.01256 7.46694 7.82323 8.66828 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.016213 C = 0.011840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.813670 B = 1726.558146 C = 2364.362138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.099 4.099 3 C -0.180 4.180 4 C -0.091 4.091 5 C 0.504 3.496 6 O -0.590 6.590 7 N -0.446 5.446 8 C -0.327 4.327 9 H 0.094 0.906 10 C 0.029 3.971 11 N -0.901 5.901 12 Si 0.894 3.106 13 H -0.286 1.286 14 H -0.280 1.280 15 H -0.212 1.212 16 C 0.047 3.953 17 C -0.189 4.189 18 C -0.179 4.179 19 H 0.051 0.949 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.146 0.854 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.277 0.723 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 -3.495 2.153 7.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.119 4.119 3 C -0.183 4.183 4 C -0.147 4.147 5 C 0.298 3.702 6 O -0.478 6.478 7 N -0.164 5.164 8 C -0.455 4.455 9 H 0.111 0.889 10 C -0.175 4.175 11 N -0.539 5.539 12 Si 0.718 3.282 13 H -0.213 1.213 14 H -0.205 1.205 15 H -0.134 1.134 16 C -0.058 4.058 17 C -0.226 4.226 18 C -0.217 4.217 19 H 0.070 0.930 20 H 0.092 0.908 21 H 0.081 0.919 22 H 0.164 0.836 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.615 -3.345 2.226 7.740 hybrid contribution 0.572 0.735 0.431 1.026 sum -6.043 -2.611 2.657 7.099 Atomic orbital electron populations 1.20796 0.92044 1.01103 1.02073 1.23737 0.96997 0.96656 0.94491 1.21624 0.97233 0.92871 1.06551 1.21011 0.90566 1.01428 1.01674 1.18991 0.86831 0.85323 0.79057 1.90471 1.14639 1.87534 1.55131 1.43078 1.08749 1.02962 1.61638 1.19205 0.80956 1.23418 1.21877 0.88901 1.25942 0.94864 0.97478 0.99229 1.69747 1.08018 1.36187 1.39902 0.86797 0.82705 0.78260 0.80445 1.21312 1.20549 1.13447 1.22212 0.88187 0.88972 1.06393 1.23743 0.98780 1.04817 0.95307 1.23168 1.01644 1.02458 0.94463 0.93017 0.90813 0.91924 0.83609 0.92791 0.91223 0.92124 0.91310 0.86748 0.86226 0.88123 0.86925 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.28 8.46 71.24 0.60 -2.67 16 2 C -0.10 -3.25 9.95 24.53 0.24 -3.01 16 3 C -0.18 -7.30 5.92 -18.73 -0.11 -7.41 16 4 C -0.09 -3.63 8.09 71.24 0.58 -3.05 16 5 C 0.50 23.21 7.30 86.53 0.63 23.84 16 6 O -0.59 -27.05 8.89 -4.21 -0.04 -27.08 16 7 N -0.45 -21.34 2.45 -617.35 -1.51 -22.85 16 8 C -0.33 -16.80 6.35 84.12 0.53 -16.27 16 9 H 0.09 5.09 5.49 -2.91 -0.02 5.08 16 10 C 0.03 1.49 5.05 84.96 0.43 1.92 16 11 N -0.90 -49.41 13.95 21.68 0.30 -49.10 16 12 Si 0.89 39.79 26.28 68.60 1.80 41.60 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.21 -8.86 4.22 99.48 0.42 -8.44 16 16 C 0.05 2.04 4.01 44.99 0.18 2.22 16 17 C -0.19 -7.32 9.19 30.59 0.28 -7.04 16 18 C -0.18 -6.82 9.87 30.59 0.30 -6.52 16 19 H 0.05 1.82 7.48 -2.39 -0.02 1.80 16 20 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 21 H 0.06 2.20 6.99 -2.39 -0.02 2.18 16 22 H 0.15 3.75 8.01 -2.91 -0.02 3.73 16 23 H 0.05 2.26 6.59 -2.39 -0.02 2.24 16 24 H 0.07 3.23 5.65 -2.39 -0.01 3.21 16 25 H 0.06 2.00 7.99 -2.39 -0.02 1.98 16 26 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.12 4.94 4.91 -2.39 -0.01 4.93 16 28 H 0.12 5.12 5.24 -4.48 -0.02 5.10 16 29 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.08 3.17 7.56 -2.39 -0.02 3.15 16 Total: -1.00 -57.29 242.84 5.06 -52.23 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.83 Total: 23.21 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 3.67 Total: -18.00 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.21 Total: -71.96 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.04 Total: -27.08 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.80 Total: 41.60 kcal Total: -57.29 5.06 -52.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308309503.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.165 kcal (2) G-P(sol) polarization free energy of solvation -57.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds