Wall clock time and date at job start Sun Mar 29 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.46753 * 2 1 4 4 C 1.34513 * 125.78674 * 90.00309 * 3 2 1 5 5 C 1.41392 * 106.83953 * 179.97438 * 4 3 2 6 6 C 1.34516 * 106.83734 * 0.21953 * 5 4 3 7 7 C 1.50696 * 125.78756 * 179.77036 * 6 5 4 8 8 N 1.46507 * 109.46752 * 90.00499 * 7 6 5 9 9 C 1.46505 * 119.99822 * 270.00002 * 8 7 6 10 10 C 1.36933 * 119.99776 * 89.99956 * 8 7 6 11 11 H 1.07999 * 120.00272 * 20.37335 * 10 8 7 12 12 C 1.38817 * 119.99774 * 200.36682 * 10 8 7 13 13 N 1.31614 * 119.99850 * 14.98897 * 12 10 8 14 14 Si 1.86800 * 119.99950 * 194.98410 * 12 10 8 15 15 H 1.48500 * 109.47225 * 85.00559 * 14 12 10 16 16 H 1.48499 * 109.46943 * 205.00665 * 14 12 10 17 17 H 1.48507 * 109.47056 * 325.00603 * 14 12 10 18 18 O 1.34294 * 125.79170 * 269.96956 * 3 2 1 19 19 H 1.08993 * 109.47221 * 299.99879 * 1 2 3 20 20 H 1.08997 * 109.46853 * 60.00291 * 1 2 3 21 21 H 1.08995 * 109.46820 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47221 * 240.00121 * 2 1 3 23 23 H 1.08997 * 109.46853 * 119.99708 * 2 1 3 24 24 H 1.07996 * 126.58453 * 359.93573 * 4 3 2 25 25 H 1.07994 * 126.57716 * 179.97438 * 5 4 3 26 26 H 1.08993 * 109.47463 * 210.00207 * 7 6 5 27 27 H 1.09003 * 109.47314 * 330.00891 * 7 6 5 28 28 H 1.08996 * 109.46827 * 95.09678 * 9 8 7 29 29 H 1.09004 * 109.46450 * 215.09660 * 9 8 7 30 30 H 1.08998 * 109.47124 * 335.09612 * 9 8 7 31 31 H 0.97000 * 119.99937 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7407 3.4232 0.6321 6 6 2.7198 3.3780 -0.7122 7 6 3.1103 4.5013 -1.6378 8 7 4.5403 4.4079 -1.9427 9 6 5.5167 5.0954 -1.0940 10 6 4.9641 3.6780 -3.0210 11 1 4.2770 3.4497 -3.8223 12 6 6.2771 3.2318 -3.0842 13 7 7.0293 3.2448 -2.0043 14 14 6.9763 2.6127 -4.7021 15 1 7.4788 3.7623 -5.4964 16 1 8.0931 1.6723 -4.4310 17 1 5.9125 1.9112 -5.4649 18 8 2.2946 2.1612 -1.0893 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.1846 1.8544 2.1204 25 1 3.0373 4.2626 1.2434 26 1 2.5364 4.4272 -2.5614 27 1 2.9031 5.4572 -1.1568 28 1 5.8983 4.4022 -0.3444 29 1 6.3414 5.4566 -1.7083 30 1 5.0366 5.9389 -0.5978 31 1 7.9466 2.9327 -2.0484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308324474.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:35 Heat of formation + Delta-G solvation = 27.635973 kcal Electronic energy + Delta-G solvation = -13762.180327 eV Core-core repulsion = 11431.970082 eV Total energy + Delta-G solvation = -2330.210245 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.72405 -35.66814 -33.79300 -32.21946 -31.26915 -28.67604 -26.03711 -25.42842 -22.85639 -21.20843 -20.77667 -19.30838 -16.75116 -16.02037 -15.32778 -14.80513 -14.22934 -13.94792 -13.54897 -13.27682 -12.69149 -12.36296 -12.06803 -12.02410 -11.73223 -11.30131 -11.01121 -10.89206 -10.76843 -10.62198 -10.40307 -10.03435 -9.89997 -9.10045 -8.58743 -7.53979 -6.87689 -5.76687 -3.21031 2.51966 3.34300 3.40098 3.44378 3.46395 3.71241 4.49716 5.09409 5.24590 5.41826 5.42580 5.62275 5.69163 5.78200 5.81789 5.91514 5.99977 6.16784 6.25815 6.44458 6.55936 6.68190 6.74253 6.95034 7.32305 7.34269 7.70473 7.80034 8.04559 8.33073 9.17705 9.78963 10.26389 11.28012 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.009332 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.594991 B = 2999.815606 C = 3432.387168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.041 4.041 4 C -0.208 4.208 5 C -0.237 4.237 6 C 0.010 3.990 7 C 0.214 3.786 8 N -0.584 5.584 9 C 0.160 3.840 10 C -0.260 4.260 11 H 0.074 0.926 12 C 0.004 3.996 13 N -0.902 5.902 14 Si 0.908 3.092 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.279 1.279 18 O -0.168 6.168 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.002 0.998 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 -2.054 4.195 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.091 4.091 4 C -0.228 4.228 5 C -0.257 4.257 6 C -0.045 4.045 7 C 0.085 3.915 8 N -0.305 5.305 9 C 0.015 3.985 10 C -0.389 4.389 11 H 0.091 0.909 12 C -0.195 4.195 13 N -0.546 5.546 14 Si 0.738 3.262 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.204 1.204 18 O -0.063 6.063 19 H 0.075 0.925 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.151 0.849 25 H 0.153 0.847 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.020 0.980 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.470 -2.180 3.890 10.467 hybrid contribution 0.702 -0.517 -0.321 0.929 sum -8.768 -2.697 3.569 9.843 Atomic orbital electron populations 1.21769 0.94662 1.01521 1.02406 1.19929 0.95707 0.88549 1.03409 1.22170 1.06751 0.95197 0.85023 1.21350 1.07893 0.95146 0.98383 1.21345 1.10854 0.99201 0.94320 1.24793 0.97700 0.85972 0.95991 1.19730 0.86964 0.90082 0.94753 1.44289 0.99512 1.56288 1.30399 1.20883 0.91180 0.92318 0.94084 1.19298 0.95439 1.28749 0.95434 0.90861 1.25054 0.98089 0.99064 0.97280 1.70102 1.08324 1.50150 1.26067 0.86213 0.78618 0.78279 0.83104 1.21231 1.21689 1.20394 1.84025 1.64819 1.22927 1.34558 0.92492 0.92388 0.92271 0.90513 0.89757 0.84872 0.84744 0.92032 0.90731 0.95013 0.93335 0.97967 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.90 37.16 0.37 -1.35 16 2 C -0.04 -0.55 6.47 -27.88 -0.18 -0.73 16 3 C -0.04 -0.78 6.57 -35.62 -0.23 -1.01 16 4 C -0.21 -3.92 10.81 -39.70 -0.43 -4.34 16 5 C -0.24 -4.83 10.81 -39.70 -0.43 -5.26 16 6 C 0.01 0.23 6.90 -35.63 -0.25 -0.02 16 7 C 0.21 4.62 6.24 -5.19 -0.03 4.58 16 8 N -0.58 -15.15 2.91 -182.50 -0.53 -15.68 16 9 C 0.16 4.00 9.02 59.85 0.54 4.54 16 10 C -0.26 -7.35 9.68 -15.06 -0.15 -7.49 16 11 H 0.07 2.03 7.86 -52.49 -0.41 1.62 16 12 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 13 N -0.90 -26.91 10.67 55.49 0.59 -26.32 16 14 Si 0.91 22.26 29.58 -169.99 -5.03 17.24 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 O -0.17 -3.78 10.65 5.73 0.06 -3.72 16 19 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 25 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 26 H 0.06 1.27 8.03 -51.93 -0.42 0.86 16 27 H 0.07 1.38 7.86 -51.93 -0.41 0.97 16 28 H 0.03 0.87 7.40 -51.93 -0.38 0.49 16 29 H 0.05 1.29 7.21 -51.93 -0.37 0.91 16 30 H 0.00 0.04 7.83 -51.93 -0.41 -0.37 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 267.91 15.07 4.04 4.04 Total: -1.00 -31.68 267.91 -6.24 -37.92 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.50 Total: -2.42 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.88 Total: -11.06 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.06 Total: -42.00 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: 0.06 Total: -3.72 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.68 -6.24 -37.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308324474.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.561 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds