Wall clock time and date at job start Sun Mar 29 2020 21:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.46753 * 2 1 4 4 C 1.34513 * 125.78674 * 90.00309 * 3 2 1 5 5 C 1.41392 * 106.83953 * 179.97438 * 4 3 2 6 6 C 1.34516 * 106.83734 * 0.21953 * 5 4 3 7 7 C 1.50696 * 125.78756 * 179.77036 * 6 5 4 8 8 N 1.46507 * 109.46752 * 90.00499 * 7 6 5 9 9 C 1.46505 * 119.99822 * 270.00002 * 8 7 6 10 10 C 1.36933 * 119.99776 * 89.99956 * 8 7 6 11 11 H 1.07999 * 120.00272 * 20.37335 * 10 8 7 12 12 C 1.38817 * 119.99774 * 200.36682 * 10 8 7 13 13 N 1.31614 * 119.99850 * 14.98897 * 12 10 8 14 14 Si 1.86800 * 119.99950 * 194.98410 * 12 10 8 15 15 H 1.48500 * 109.47225 * 85.00559 * 14 12 10 16 16 H 1.48499 * 109.46943 * 205.00665 * 14 12 10 17 17 H 1.48507 * 109.47056 * 325.00603 * 14 12 10 18 18 O 1.34294 * 125.79170 * 269.96956 * 3 2 1 19 19 H 1.08993 * 109.47221 * 299.99879 * 1 2 3 20 20 H 1.08997 * 109.46853 * 60.00291 * 1 2 3 21 21 H 1.08995 * 109.46820 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47221 * 240.00121 * 2 1 3 23 23 H 1.08997 * 109.46853 * 119.99708 * 2 1 3 24 24 H 1.07996 * 126.58453 * 359.93573 * 4 3 2 25 25 H 1.07994 * 126.57716 * 179.97438 * 5 4 3 26 26 H 1.08993 * 109.47463 * 210.00207 * 7 6 5 27 27 H 1.09003 * 109.47314 * 330.00891 * 7 6 5 28 28 H 1.08996 * 109.46827 * 95.09678 * 9 8 7 29 29 H 1.09004 * 109.46450 * 215.09660 * 9 8 7 30 30 H 1.08998 * 109.47124 * 335.09612 * 9 8 7 31 31 H 0.97000 * 119.99937 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7407 3.4232 0.6321 6 6 2.7198 3.3780 -0.7122 7 6 3.1103 4.5013 -1.6378 8 7 4.5403 4.4079 -1.9427 9 6 5.5167 5.0954 -1.0940 10 6 4.9641 3.6780 -3.0210 11 1 4.2770 3.4497 -3.8223 12 6 6.2771 3.2318 -3.0842 13 7 7.0293 3.2448 -2.0043 14 14 6.9763 2.6127 -4.7021 15 1 7.4788 3.7623 -5.4964 16 1 8.0931 1.6723 -4.4310 17 1 5.9125 1.9112 -5.4649 18 8 2.2946 2.1612 -1.0893 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.1846 1.8544 2.1204 25 1 3.0373 4.2626 1.2434 26 1 2.5364 4.4272 -2.5614 27 1 2.9031 5.4572 -1.1568 28 1 5.8983 4.4022 -0.3444 29 1 6.3414 5.4566 -1.7083 30 1 5.0366 5.9389 -0.5978 31 1 7.9466 2.9327 -2.0484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308324474.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:34 Heat of formation + Delta-G solvation = 8.965215 kcal Electronic energy + Delta-G solvation = -13762.989952 eV Core-core repulsion = 11431.970082 eV Total energy + Delta-G solvation = -2331.019870 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.30324 -37.59982 -35.02919 -33.97279 -33.08762 -30.32474 -28.02501 -27.07271 -24.27827 -22.96072 -22.38588 -20.85743 -18.82345 -17.60778 -16.98644 -16.67620 -15.57582 -15.52187 -15.32978 -15.02392 -14.18146 -13.88548 -13.60181 -13.57437 -13.21991 -12.83943 -12.81549 -12.55139 -12.41862 -12.23096 -12.08073 -11.94005 -11.82260 -10.71849 -10.64783 -9.15484 -8.88932 -7.89878 -5.37577 0.95908 1.43654 1.45421 1.53769 1.82442 2.24095 2.48294 3.25798 3.73489 3.85060 4.13365 4.26660 4.26752 4.40782 4.55581 4.63830 4.78397 4.80640 4.93969 4.97395 5.06054 5.23038 5.28897 5.30736 5.45540 5.57241 5.67682 5.83021 6.23774 6.47538 7.07093 7.75736 8.18054 9.13309 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.009332 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.594991 B = 2999.815606 C = 3432.387168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.044 4.044 4 C -0.220 4.220 5 C -0.234 4.234 6 C -0.026 4.026 7 C 0.213 3.787 8 N -0.603 5.603 9 C 0.174 3.826 10 C -0.271 4.271 11 H 0.072 0.928 12 C -0.051 4.051 13 N -0.935 5.935 14 Si 0.972 3.028 15 H -0.278 1.278 16 H -0.294 1.294 17 H -0.271 1.271 18 O -0.197 6.197 19 H 0.062 0.938 20 H 0.044 0.956 21 H 0.087 0.913 22 H 0.072 0.928 23 H 0.109 0.891 24 H 0.165 0.835 25 H 0.150 0.850 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.000 1.000 29 H 0.023 0.977 30 H 0.041 0.959 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 -2.673 4.679 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.094 4.094 4 C -0.238 4.238 5 C -0.255 4.255 6 C -0.080 4.080 7 C 0.086 3.914 8 N -0.324 5.324 9 C 0.030 3.970 10 C -0.401 4.401 11 H 0.090 0.910 12 C -0.247 4.247 13 N -0.581 5.581 14 Si 0.799 3.201 15 H -0.204 1.204 16 H -0.221 1.221 17 H -0.196 1.196 18 O -0.094 6.094 19 H 0.081 0.919 20 H 0.064 0.936 21 H 0.106 0.894 22 H 0.091 0.909 23 H 0.127 0.873 24 H 0.183 0.817 25 H 0.168 0.832 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.018 0.982 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.741 -2.785 4.377 11.929 hybrid contribution 0.947 -0.344 -0.394 1.081 sum -9.795 -3.129 3.983 11.027 Atomic orbital electron populations 1.21731 0.92501 1.03347 1.02097 1.20206 0.97498 0.85728 1.04414 1.23166 1.05299 0.96692 0.84289 1.21757 1.07699 0.94463 0.99931 1.21705 1.09393 1.00402 0.93963 1.24652 1.00303 0.86334 0.96673 1.19836 0.84620 0.91518 0.95410 1.44438 1.01240 1.56357 1.30372 1.20629 0.90928 0.92611 0.92855 1.19591 0.95721 1.28302 0.96452 0.91028 1.25832 0.98488 0.99955 1.00381 1.70269 1.08254 1.51709 1.27868 0.85217 0.77690 0.77745 0.79404 1.20425 1.22077 1.19588 1.83983 1.65563 1.23498 1.36390 0.91862 0.93641 0.89391 0.90893 0.87325 0.81739 0.83194 0.91773 0.87570 0.98179 0.95772 0.94035 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.90 71.98 0.71 -2.17 16 2 C -0.04 -1.09 6.47 29.85 0.19 -0.89 16 3 C -0.04 -1.63 6.57 24.83 0.16 -1.47 16 4 C -0.22 -7.79 10.81 22.19 0.24 -7.55 16 5 C -0.23 -9.23 10.81 22.19 0.24 -8.99 16 6 C -0.03 -1.15 6.90 24.83 0.17 -0.98 16 7 C 0.21 9.08 6.24 85.63 0.53 9.61 16 8 N -0.60 -31.29 2.91 -731.29 -2.13 -33.42 16 9 C 0.17 8.78 9.02 127.77 1.15 9.93 16 10 C -0.27 -15.45 9.68 84.04 0.81 -14.64 16 11 H 0.07 4.00 7.86 -2.91 -0.02 3.98 16 12 C -0.05 -2.96 5.06 84.86 0.43 -2.53 16 13 N -0.94 -56.94 10.67 21.65 0.23 -56.71 16 14 Si 0.97 46.23 29.58 68.60 2.03 48.26 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 O -0.20 -8.86 10.65 -2.40 -0.03 -8.89 16 19 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 25 H 0.15 5.28 8.06 -2.91 -0.02 5.26 16 26 H 0.06 2.64 8.03 -2.39 -0.02 2.62 16 27 H 0.11 3.74 7.86 -2.39 -0.02 3.72 16 28 H 0.00 -0.01 7.40 -2.39 -0.02 -0.03 16 29 H 0.02 1.29 7.21 -2.38 -0.02 1.27 16 30 H 0.04 1.71 7.83 -2.39 -0.02 1.69 16 31 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -68.50 267.91 5.85 -62.66 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.09 Total: 7.79 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.65 Total: -19.68 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -1.90 Total: -90.13 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.03 Total: -8.89 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -68.50 5.85 -62.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308324474.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.621 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds