Wall clock time and date at job start Sun Mar 29 2020 22:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00459 * 2 1 4 4 H 1.48499 * 109.47234 * 275.82768 * 3 2 1 5 5 H 1.48504 * 109.47129 * 35.82980 * 3 2 1 6 6 H 1.48499 * 109.47258 * 155.83099 * 3 2 1 7 7 C 1.38819 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99500 * 337.41776 * 7 2 1 9 9 N 1.36929 * 120.00162 * 157.42293 * 7 2 1 10 10 C 1.46499 * 120.00163 * 142.06892 * 9 7 2 11 11 C 1.52998 * 109.47175 * 270.49653 * 10 9 7 12 12 C 1.53003 * 117.50493 * 243.74813 * 11 10 9 13 13 C 1.53001 * 117.50087 * 175.08240 * 11 10 9 14 14 C 1.46503 * 119.99777 * 322.07054 * 9 7 2 15 15 C 1.53006 * 109.47202 * 269.99849 * 14 9 7 16 16 C 1.53777 * 113.61702 * 184.99930 * 15 14 9 17 17 C 1.53781 * 87.17045 * 220.06060 * 16 15 14 18 18 C 1.53771 * 87.08163 * 25.39274 * 17 16 15 19 19 H 0.97003 * 119.99633 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47085 * 30.49979 * 10 9 7 21 21 H 1.09003 * 109.46651 * 150.50221 * 10 9 7 22 22 H 1.09001 * 115.54855 * 29.42543 * 11 10 9 23 23 H 1.09001 * 117.49326 * 0.02562 * 12 11 10 24 24 H 1.09000 * 117.49966 * 145.02279 * 12 11 10 25 25 H 1.08994 * 117.50419 * 214.98242 * 13 11 10 26 26 H 1.09007 * 117.49763 * 0.02562 * 13 11 10 27 27 H 1.09001 * 109.47319 * 150.00138 * 14 9 7 28 28 H 1.08998 * 109.47372 * 30.00156 * 14 9 7 29 29 H 1.09001 * 112.90322 * 316.25685 * 15 14 9 30 30 H 1.08997 * 113.61185 * 105.46958 * 16 15 14 31 31 H 1.08995 * 113.61125 * 334.65263 * 16 15 14 32 32 H 1.09007 * 113.61146 * 139.94354 * 17 16 15 33 33 H 1.08997 * 113.61586 * 270.84089 * 17 16 15 34 34 H 1.09003 * 113.61735 * 89.11557 * 18 17 16 35 35 H 1.09005 * 113.61224 * 219.93238 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3747 2.1174 -1.3928 5 1 1.5148 2.6139 0.8196 6 1 3.6039 1.4075 0.5732 7 6 2.0102 -1.2023 -0.0005 8 1 1.5321 -2.1018 0.3582 9 7 3.3007 -1.2476 -0.4558 10 6 4.2836 -2.1041 0.2125 11 6 4.9659 -1.3184 1.3340 12 6 6.4693 -1.0645 1.2054 13 6 5.9482 -2.0751 2.2303 14 6 3.6987 -0.4396 -1.6113 15 6 3.4883 -1.2460 -2.8944 16 6 3.9905 -0.5318 -4.1603 17 6 2.7331 -1.0643 -4.8674 18 6 2.0707 -1.1158 -3.4807 19 1 -0.4850 0.8401 -0.0004 20 1 3.7805 -2.9748 0.6329 21 1 5.0319 -2.4304 -0.5099 22 1 4.3615 -0.5380 1.7963 23 1 6.9721 -1.4569 0.3215 24 1 6.8539 -0.1172 1.5834 25 1 5.9903 -1.7923 3.2821 26 1 6.1086 -3.1328 2.0208 27 1 4.7507 -0.1692 -1.5206 28 1 3.0927 0.4657 -1.6476 29 1 3.8324 -2.2767 -2.8089 30 1 4.9201 -0.9431 -4.5538 31 1 4.0133 0.5541 -4.0689 32 1 2.2743 -0.3433 -5.5441 33 1 2.8704 -2.0452 -5.3224 34 1 1.5679 -0.1896 -3.2022 35 1 1.4491 -1.9978 -3.3261 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308354717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:59 Heat of formation + Delta-G solvation = 60.883744 kcal Electronic energy + Delta-G solvation = -14386.699084 eV Core-core repulsion = 12193.763665 eV Total energy + Delta-G solvation = -2192.935419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.39980 -37.03322 -34.57315 -31.45679 -28.01204 -26.15439 -24.87363 -23.00021 -21.91932 -21.35498 -19.51479 -18.71897 -16.74264 -15.37726 -15.19146 -14.71309 -14.17902 -13.71878 -13.47601 -12.90352 -12.50406 -11.88420 -11.81503 -11.58526 -11.37509 -11.15686 -10.94424 -10.83005 -10.54788 -10.17450 -9.81772 -9.79309 -9.68721 -9.44473 -9.29031 -9.20438 -8.44780 -6.74747 -5.94299 -3.33777 3.33622 3.49462 3.55602 4.34304 4.57221 4.93364 5.23315 5.26069 5.34276 5.43631 5.44223 5.49371 5.62486 5.79020 5.97973 6.07920 6.10587 6.18564 6.27385 6.29971 6.35348 6.42845 6.48993 6.52316 6.61258 6.66443 6.83310 6.87883 7.00383 7.03257 7.24200 8.12756 8.44748 9.06434 9.78140 10.20474 11.21688 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.014362 C = 0.010487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.592475 B = 1949.173126 C = 2669.435872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.039 3.961 3 Si 0.869 3.131 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.267 1.267 7 C -0.259 4.259 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.154 4.154 12 C -0.191 4.191 13 C -0.190 4.190 14 C 0.148 3.852 15 C -0.117 4.117 16 C -0.142 4.142 17 C -0.148 4.148 18 C -0.114 4.114 19 H 0.261 0.739 20 H 0.055 0.945 21 H 0.040 0.960 22 H 0.104 0.896 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 -1.810 -3.836 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.161 4.161 3 Si 0.700 3.300 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.191 1.191 7 C -0.388 4.388 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.228 4.228 13 C -0.228 4.228 14 C 0.022 3.978 15 C -0.138 4.138 16 C -0.180 4.180 17 C -0.185 4.185 18 C -0.152 4.152 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.122 0.878 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.433 -1.729 -3.820 10.323 hybrid contribution 0.457 1.156 0.108 1.248 sum 9.891 -0.573 -3.712 10.580 Atomic orbital electron populations 1.69874 1.05927 1.26462 1.51953 1.25421 0.94957 0.97419 0.98313 0.87052 0.80948 0.85117 0.76875 1.21550 1.23243 1.19145 1.18743 0.86253 0.94154 1.39612 0.90543 1.44115 1.07432 1.51474 1.29170 1.20526 0.90811 0.92658 0.90807 1.23469 0.90668 1.02521 1.00783 1.22938 0.98800 1.00008 1.01097 1.22863 1.06712 0.97205 0.95982 1.21156 0.96918 0.93688 0.85989 1.23067 0.96645 0.99635 0.94435 1.22938 0.96946 1.00138 0.97964 1.22875 0.97920 1.00297 0.97443 1.22728 0.96524 1.02512 0.93399 0.92899 0.92655 0.94174 0.87809 0.89520 0.90073 0.89825 0.89405 0.94493 0.92908 0.90214 0.92550 0.90873 0.92483 0.91048 0.90397 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.97 55.49 0.78 -26.43 16 2 C 0.04 1.11 5.30 -17.43 -0.09 1.02 16 3 Si 0.87 22.26 25.06 -169.99 -4.26 18.00 16 4 H -0.29 -7.20 6.69 56.52 0.38 -6.82 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.26 -7.09 9.91 -15.06 -0.15 -7.24 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 N -0.60 -14.02 2.07 -173.24 -0.36 -14.38 16 10 C 0.18 3.55 5.95 -4.04 -0.02 3.53 16 11 C -0.15 -2.89 6.01 -90.62 -0.54 -3.44 16 12 C -0.19 -3.03 10.18 -26.69 -0.27 -3.30 16 13 C -0.19 -2.90 10.26 -26.69 -0.27 -3.17 16 14 C 0.15 3.21 4.35 -4.04 -0.02 3.19 16 15 C -0.12 -2.23 3.97 -89.72 -0.36 -2.59 16 16 C -0.14 -2.28 7.64 -25.92 -0.20 -2.47 16 17 C -0.15 -2.34 8.08 -25.92 -0.21 -2.55 16 18 C -0.11 -2.25 7.64 -25.83 -0.20 -2.45 16 19 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 20 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 21 H 0.04 0.72 7.80 -51.93 -0.41 0.32 16 22 H 0.10 2.26 8.14 -51.93 -0.42 1.84 16 23 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 27 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.05 1.27 3.05 -51.93 -0.16 1.11 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.72 7.90 -51.93 -0.41 1.31 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 281.92 15.07 4.25 4.25 Total: -1.00 -28.77 281.92 -7.96 -36.74 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.03 Total: 1.29 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.33 Total: -19.47 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.42 Total: -40.81 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.26 Total: 18.00 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.77 -7.96 -36.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308354717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.621 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds