Wall clock time and date at job start Sun Mar 29 2020 22:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00459 * 2 1 4 4 H 1.48499 * 109.47234 * 275.82768 * 3 2 1 5 5 H 1.48504 * 109.47129 * 35.82980 * 3 2 1 6 6 H 1.48499 * 109.47258 * 155.83099 * 3 2 1 7 7 C 1.38819 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99500 * 337.41776 * 7 2 1 9 9 N 1.36929 * 120.00162 * 157.42293 * 7 2 1 10 10 C 1.46499 * 120.00163 * 142.06892 * 9 7 2 11 11 C 1.52998 * 109.47175 * 270.49653 * 10 9 7 12 12 C 1.53003 * 117.50493 * 243.74813 * 11 10 9 13 13 C 1.53001 * 117.50087 * 175.08240 * 11 10 9 14 14 C 1.46503 * 119.99777 * 322.07054 * 9 7 2 15 15 C 1.53006 * 109.47202 * 269.99849 * 14 9 7 16 16 C 1.53777 * 113.61702 * 184.99930 * 15 14 9 17 17 C 1.53781 * 87.17045 * 220.06060 * 16 15 14 18 18 C 1.53771 * 87.08163 * 25.39274 * 17 16 15 19 19 H 0.97003 * 119.99633 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47085 * 30.49979 * 10 9 7 21 21 H 1.09003 * 109.46651 * 150.50221 * 10 9 7 22 22 H 1.09001 * 115.54855 * 29.42543 * 11 10 9 23 23 H 1.09001 * 117.49326 * 0.02562 * 12 11 10 24 24 H 1.09000 * 117.49966 * 145.02279 * 12 11 10 25 25 H 1.08994 * 117.50419 * 214.98242 * 13 11 10 26 26 H 1.09007 * 117.49763 * 0.02562 * 13 11 10 27 27 H 1.09001 * 109.47319 * 150.00138 * 14 9 7 28 28 H 1.08998 * 109.47372 * 30.00156 * 14 9 7 29 29 H 1.09001 * 112.90322 * 316.25685 * 15 14 9 30 30 H 1.08997 * 113.61185 * 105.46958 * 16 15 14 31 31 H 1.08995 * 113.61125 * 334.65263 * 16 15 14 32 32 H 1.09007 * 113.61146 * 139.94354 * 17 16 15 33 33 H 1.08997 * 113.61586 * 270.84089 * 17 16 15 34 34 H 1.09003 * 113.61735 * 89.11557 * 18 17 16 35 35 H 1.09005 * 113.61224 * 219.93238 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3747 2.1174 -1.3928 5 1 1.5148 2.6139 0.8196 6 1 3.6039 1.4075 0.5732 7 6 2.0102 -1.2023 -0.0005 8 1 1.5321 -2.1018 0.3582 9 7 3.3007 -1.2476 -0.4558 10 6 4.2836 -2.1041 0.2125 11 6 4.9659 -1.3184 1.3340 12 6 6.4693 -1.0645 1.2054 13 6 5.9482 -2.0751 2.2303 14 6 3.6987 -0.4396 -1.6113 15 6 3.4883 -1.2460 -2.8944 16 6 3.9905 -0.5318 -4.1603 17 6 2.7331 -1.0643 -4.8674 18 6 2.0707 -1.1158 -3.4807 19 1 -0.4850 0.8401 -0.0004 20 1 3.7805 -2.9748 0.6329 21 1 5.0319 -2.4304 -0.5099 22 1 4.3615 -0.5380 1.7963 23 1 6.9721 -1.4569 0.3215 24 1 6.8539 -0.1172 1.5834 25 1 5.9903 -1.7923 3.2821 26 1 6.1086 -3.1328 2.0208 27 1 4.7507 -0.1692 -1.5206 28 1 3.0927 0.4657 -1.6476 29 1 3.8324 -2.2767 -2.8089 30 1 4.9201 -0.9431 -4.5538 31 1 4.0133 0.5541 -4.0689 32 1 2.2743 -0.3433 -5.5441 33 1 2.8704 -2.0452 -5.3224 34 1 1.5679 -0.1896 -3.2022 35 1 1.4491 -1.9978 -3.3261 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308354717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:58 Heat of formation + Delta-G solvation = 45.483019 kcal Electronic energy + Delta-G solvation = -14387.366909 eV Core-core repulsion = 12193.763665 eV Total energy + Delta-G solvation = -2193.603244 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91514 -38.44805 -36.30835 -33.56586 -29.59557 -28.02899 -26.31066 -24.66882 -23.13708 -23.05114 -21.07738 -20.17845 -18.77328 -17.15531 -16.81997 -16.21373 -15.72189 -15.27516 -15.03069 -14.75049 -14.43902 -13.52126 -13.30149 -13.21052 -12.95453 -12.76124 -12.50544 -12.42679 -12.23560 -11.83306 -11.58278 -11.38209 -11.16630 -11.02273 -10.85997 -10.64569 -10.54936 -8.68648 -8.16621 -5.51084 1.26687 1.37656 1.48994 2.42960 3.01529 3.09465 3.38210 3.87114 3.96795 3.99887 4.07921 4.14211 4.18876 4.30310 4.62011 4.68244 4.72037 4.81807 4.86454 4.94565 4.99469 5.00304 5.05977 5.09872 5.15414 5.23220 5.29073 5.33080 5.49210 5.52676 5.74424 5.99831 6.21787 7.06142 7.70426 8.13072 9.03854 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.014362 C = 0.010487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.592475 B = 1949.173126 C = 2669.435872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.011 4.011 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.314 1.314 6 H -0.258 1.258 7 C -0.240 4.240 8 H 0.038 0.962 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.188 4.188 12 C -0.174 4.174 13 C -0.168 4.168 14 C 0.144 3.856 15 C -0.119 4.119 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.130 4.130 19 H 0.259 0.741 20 H 0.043 0.957 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.847 -1.964 -4.998 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.207 4.207 3 Si 0.759 3.241 4 H -0.206 1.206 5 H -0.244 1.244 6 H -0.182 1.182 7 C -0.370 4.370 8 H 0.056 0.944 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.209 4.209 12 C -0.211 4.211 13 C -0.206 4.206 14 C 0.019 3.981 15 C -0.140 4.140 16 C -0.165 4.165 17 C -0.167 4.167 18 C -0.168 4.168 19 H 0.068 0.932 20 H 0.062 0.938 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.123 0.877 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.722 -1.893 -4.989 13.796 hybrid contribution -0.549 1.082 0.505 1.315 sum 12.173 -0.810 -4.484 12.998 Atomic orbital electron populations 1.69992 1.07500 1.26933 1.54888 1.25897 0.95374 1.00306 0.99153 0.86075 0.79769 0.81260 0.76965 1.20630 1.24356 1.18219 1.18566 0.87987 0.92612 1.37854 0.94394 1.44213 1.06668 1.52067 1.30379 1.20575 0.90533 0.91735 0.91686 1.23111 0.92239 1.03312 1.02250 1.23044 0.95572 1.00602 1.01849 1.22969 1.03191 0.98148 0.96285 1.21228 0.97416 0.92936 0.86487 1.23046 0.96352 1.00048 0.94542 1.22862 0.98285 0.99907 0.95446 1.22818 0.96751 1.01898 0.95232 1.22719 0.96787 0.99873 0.97408 0.93182 0.93823 0.91450 0.91517 0.87652 0.89373 0.88820 0.87538 0.92343 0.95380 0.89540 0.89428 0.90945 0.91205 0.88883 0.93710 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 13.97 21.65 0.30 -59.63 16 2 C -0.01 -0.66 5.30 84.86 0.45 -0.21 16 3 Si 0.93 47.33 25.06 68.60 1.72 49.05 16 4 H -0.28 -13.65 6.69 99.48 0.67 -12.98 16 5 H -0.31 -16.38 7.11 99.48 0.71 -15.67 16 6 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.24 -13.62 9.91 84.04 0.83 -12.79 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 N -0.61 -28.48 2.07 -702.00 -1.45 -29.93 16 10 C 0.18 6.94 5.95 86.38 0.51 7.46 16 11 C -0.19 -6.79 6.01 -10.79 -0.06 -6.85 16 12 C -0.17 -4.84 10.18 30.62 0.31 -4.53 16 13 C -0.17 -4.60 10.26 30.62 0.31 -4.29 16 14 C 0.14 6.05 4.35 86.38 0.38 6.42 16 15 C -0.12 -4.33 3.97 -10.21 -0.04 -4.37 16 16 C -0.13 -3.61 7.64 31.12 0.24 -3.37 16 17 C -0.13 -3.73 8.08 31.12 0.25 -3.48 16 18 C -0.13 -5.13 7.64 31.18 0.24 -4.89 16 19 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 20 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 21 H 0.07 2.22 7.80 -2.39 -0.02 2.20 16 22 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 23 H 0.11 2.56 8.03 -2.39 -0.02 2.55 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 28 H 0.03 1.33 3.05 -2.39 -0.01 1.32 16 29 H 0.09 3.02 8.14 -2.39 -0.02 3.01 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 2.03 7.90 -2.39 -0.02 2.01 16 35 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -64.67 281.92 4.98 -59.70 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.99 Total: 11.72 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.42 Total: -30.89 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -1.15 Total: -89.56 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.72 Total: 49.05 kcal Total: -64.67 4.98 -59.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308354717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.180 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds