Wall clock time and date at job start Sun Mar 29 2020 21:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34512 * 125.78988 * 2 1 4 4 C 1.41380 * 106.84217 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.58013 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47570 * 259.97747 * 5 4 3 7 7 C 1.46892 * 111.00364 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47356 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99788 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00192 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99999 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00398 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46765 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47403 * 120.00007 * 12 10 8 15 15 H 1.48501 * 109.47189 * 240.00263 * 12 10 8 16 16 C 1.34508 * 106.84125 * 0.02562 * 4 3 2 17 17 C 1.50700 * 125.79337 * 180.02562 * 16 4 3 18 18 O 1.34306 * 125.78985 * 179.69416 * 2 1 3 19 19 H 1.09002 * 109.47152 * 89.99824 * 1 2 3 20 20 H 1.09001 * 109.46980 * 329.99925 * 1 2 3 21 21 H 1.09004 * 109.47113 * 209.99906 * 1 2 3 22 22 H 1.08001 * 126.58016 * 359.96741 * 3 2 1 23 23 H 1.08999 * 109.46995 * 19.97952 * 5 4 3 24 24 H 1.09000 * 109.46821 * 139.97695 * 5 4 3 25 25 H 1.00904 * 110.99231 * 56.04434 * 6 5 4 26 26 H 1.09001 * 109.47384 * 300.00354 * 7 6 5 27 27 H 1.09002 * 109.46858 * 60.00045 * 7 6 5 28 28 H 0.97008 * 120.00193 * 179.97438 * 11 10 8 29 29 H 1.08998 * 109.47388 * 89.99499 * 17 16 4 30 30 H 1.08999 * 109.47180 * 210.00295 * 17 16 4 31 31 H 1.09005 * 109.46548 * 329.99775 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6321 0.0006 5 6 4.8732 1.4850 0.0014 6 7 5.4141 1.5637 -1.3621 7 6 6.6282 2.3898 -1.4001 8 6 7.1526 2.4476 -2.8117 9 1 6.6354 1.9235 -3.6018 10 6 8.2926 3.1695 -3.0946 11 7 8.9227 3.8073 -2.1325 12 14 8.9422 3.2419 -4.8445 13 1 8.0590 2.4452 -5.7337 14 1 8.9665 4.6532 -5.3056 15 1 10.3179 2.6840 -4.8853 16 6 3.5814 -0.7121 0.0004 17 6 4.7706 -1.6378 0.0014 18 8 2.2925 -1.0894 0.0058 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5139 21 1 -0.3633 -0.8900 0.5138 22 1 1.9666 2.1204 -0.0005 23 1 4.6259 2.4868 0.3525 24 1 5.6178 1.0417 0.6626 25 1 4.7201 1.9116 -2.0068 26 1 6.3927 3.3978 -1.0588 27 1 7.3852 1.9532 -0.7485 28 1 9.7250 4.3150 -2.3314 29 1 5.0564 -1.8611 1.0292 30 1 4.5111 -2.5632 -0.5129 31 1 5.6044 -1.1586 -0.5117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308358614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:10 Heat of formation + Delta-G solvation = -21.945662 kcal Electronic energy + Delta-G solvation = -13224.399570 eV Core-core repulsion = 10892.039304 eV Total energy + Delta-G solvation = -2332.360266 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.53310 -37.45589 -35.04619 -33.86742 -33.48071 -30.43777 -29.22865 -26.43840 -24.88873 -23.42951 -22.22878 -20.30930 -18.50932 -17.28503 -17.21284 -16.73911 -16.21859 -15.16205 -15.06579 -14.66177 -14.35090 -14.07301 -13.75822 -13.64223 -13.38988 -13.26715 -13.18468 -12.90013 -12.69687 -12.46377 -12.22571 -11.97444 -11.33535 -10.67964 -10.60417 -9.18220 -9.03890 -8.23030 -6.34415 0.78877 1.41409 1.42086 1.55799 1.60277 2.03924 2.40552 3.10312 3.65612 3.87550 3.90947 4.07869 4.46624 4.49982 4.53792 4.66719 4.71973 4.74559 4.83783 4.95036 5.04056 5.09237 5.24083 5.25510 5.44947 5.59861 5.64840 6.00150 6.27194 6.42098 6.67013 6.86257 7.36640 8.88805 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051492 B = 0.005907 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.647445 B = 4739.398122 C = 4819.651235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.025 4.025 3 C -0.222 4.222 4 C -0.190 4.190 5 C 0.133 3.867 6 N -0.679 5.679 7 C 0.208 3.792 8 C -0.535 4.535 9 H 0.063 0.937 10 C 0.002 3.998 11 N -0.934 5.934 12 Si 0.974 3.026 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.007 4.007 17 C -0.070 4.070 18 O -0.187 6.187 19 H 0.091 0.909 20 H 0.104 0.896 21 H 0.086 0.914 22 H 0.154 0.846 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.332 0.668 26 H -0.040 1.040 27 H 0.005 0.995 28 H 0.266 0.734 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 -8.138 4.359 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.242 4.242 4 C -0.192 4.192 5 C 0.004 3.996 6 N -0.309 5.309 7 C 0.080 3.920 8 C -0.573 4.573 9 H 0.081 0.919 10 C -0.196 4.196 11 N -0.574 5.574 12 Si 0.799 3.201 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.058 4.058 17 C -0.126 4.126 18 O -0.085 6.085 19 H 0.110 0.890 20 H 0.123 0.877 21 H 0.105 0.895 22 H 0.172 0.828 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.148 0.852 26 H -0.022 1.022 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.947 -8.916 4.462 17.144 hybrid contribution 0.417 1.529 -0.469 1.652 sum -13.531 -7.387 3.993 15.924 Atomic orbital electron populations 1.20450 0.82004 1.05249 1.04575 1.23065 0.95527 0.83333 1.05497 1.21683 0.91992 1.00350 1.10139 1.20213 0.95285 0.93876 1.09811 1.20106 0.92164 0.95835 0.91516 1.60604 1.07848 1.56299 1.06140 1.19245 0.87700 0.88624 0.96438 1.21541 1.10594 1.30541 0.94620 0.91906 1.25945 0.96778 0.94679 1.02189 1.70098 1.19549 1.33407 1.34374 0.85262 0.78157 0.77984 0.78737 1.18791 1.20250 1.20216 1.22585 0.83502 0.94590 1.05104 1.20367 0.90707 0.97443 1.04112 1.83931 1.16496 1.35703 1.72334 0.89032 0.87731 0.89494 0.82820 0.95846 0.91288 0.85152 1.02191 0.97720 0.92552 0.88858 0.89418 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.24 0.74 -0.30 16 2 C -0.02 -0.66 7.32 24.83 0.18 -0.47 16 3 C -0.22 -6.69 10.77 22.19 0.24 -6.45 16 4 C -0.19 -6.59 5.68 -19.94 -0.11 -6.70 16 5 C 0.13 5.20 5.70 85.56 0.49 5.69 16 6 N -0.68 -30.93 6.48 -522.00 -3.38 -34.31 16 7 C 0.21 11.43 5.44 85.56 0.47 11.90 16 8 C -0.53 -31.12 9.32 25.60 0.24 -30.88 16 9 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 10 C 0.00 0.13 5.46 84.65 0.46 0.59 16 11 N -0.93 -56.92 13.29 21.44 0.28 -56.64 16 12 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 16 C -0.01 -0.24 7.32 24.83 0.18 -0.05 16 17 C -0.07 -1.89 10.20 71.24 0.73 -1.16 16 18 O -0.19 -5.66 10.65 -2.55 -0.03 -5.68 16 19 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 20 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 22 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 23 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 2.68 8.13 -2.39 -0.02 2.66 16 25 H 0.33 14.86 8.71 -89.69 -0.78 14.07 16 26 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 27 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.61 7.87 -2.38 -0.02 2.60 16 Total: -1.00 -67.06 272.93 2.84 -64.22 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.33 Total: 13.53 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 3.61 Total: -27.84 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -3.10 Total: -90.95 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.03 Total: -5.68 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.06 2.84 -64.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308358614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.271 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds