Wall clock time and date at job start Sun Mar 29 2020 22:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.46968 * 2 1 4 4 C 1.46897 * 111.00330 * 287.99226 * 3 2 1 5 5 C 1.50697 * 109.47175 * 160.36261 * 4 3 2 6 6 H 1.07993 * 120.00303 * 4.66240 * 5 4 3 7 7 C 1.37879 * 119.99807 * 184.66543 * 5 4 3 8 8 N 1.31518 * 120.00287 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00047 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47227 * 89.99548 * 9 7 5 11 11 H 1.48499 * 109.47322 * 210.00165 * 9 7 5 12 12 H 1.48506 * 109.47114 * 329.99981 * 9 7 5 13 13 C 1.46901 * 110.99702 * 164.04041 * 3 2 1 14 14 C 1.50699 * 109.47041 * 293.95423 * 13 3 2 15 15 C 1.34668 * 126.59125 * 265.04137 * 14 13 3 16 16 N 1.34123 * 108.02125 * 179.74712 * 15 14 13 17 17 C 1.30503 * 109.25679 * 0.36777 * 16 15 14 18 18 N 1.35044 * 108.69750 * 359.63390 * 17 16 15 19 19 H 0.97001 * 126.39913 * 180.24804 * 18 17 16 20 20 H 1.09000 * 109.46786 * 299.38410 * 1 2 3 21 21 H 1.09006 * 109.46745 * 59.38292 * 1 2 3 22 22 H 1.08996 * 109.46893 * 179.38039 * 1 2 3 23 23 H 1.09000 * 109.46799 * 239.99896 * 2 1 3 24 24 H 1.08995 * 109.46839 * 120.00184 * 2 1 3 25 25 H 1.08995 * 109.47108 * 280.36732 * 4 3 2 26 26 H 1.09007 * 109.47121 * 40.36137 * 4 3 2 27 27 H 0.97000 * 119.99672 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46946 * 173.95739 * 13 3 2 29 29 H 1.08999 * 109.47049 * 53.95521 * 13 3 2 30 30 H 1.07996 * 125.98954 * 359.92715 * 15 14 13 31 31 H 1.07997 * 125.64779 * 179.89332 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7958 2.0226 -1.3043 5 6 1.8471 3.5204 -1.1467 6 1 2.1023 3.9544 -0.1913 7 6 1.5683 4.3367 -2.2223 8 7 1.2580 3.8082 -3.3860 9 14 1.6312 6.1934 -2.0268 10 1 3.0016 6.6771 -2.3321 11 1 0.6643 6.8227 -2.9618 12 1 1.2777 6.5564 -0.6309 13 6 3.4384 1.4418 0.3771 14 6 3.5947 1.0062 1.8113 15 6 3.6435 1.8072 2.8927 16 7 3.7834 1.0313 3.9778 17 6 3.8311 -0.2197 3.6091 18 7 3.7137 -0.2797 2.2651 19 1 3.7134 -1.0839 1.7227 20 1 -0.3633 0.5042 0.8955 21 1 -0.3633 0.5234 -0.8845 22 1 -0.3633 -1.0276 -0.0111 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.5700 1.7039 -2.0022 26 1 0.8182 1.7309 -1.6883 27 1 1.0622 4.3826 -4.1427 28 1 3.8033 2.4628 0.2657 29 1 4.0129 0.7780 -0.2690 30 1 3.5782 2.8851 2.8875 31 1 3.9415 -1.0668 4.2698 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308366053.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:21 Heat of formation + Delta-G solvation = 59.373626 kcal Electronic energy + Delta-G solvation = -13721.007283 eV Core-core repulsion = 11424.466037 eV Total energy + Delta-G solvation = -2296.541246 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.73211 -36.97154 -32.72724 -32.15033 -31.11081 -29.27668 -26.78278 -24.46680 -22.70342 -21.19035 -20.69193 -19.89623 -17.49701 -16.50666 -15.18247 -14.80947 -14.31053 -14.27477 -13.83454 -13.36670 -13.13919 -12.89403 -12.16093 -11.85896 -11.41844 -11.24460 -11.01150 -10.85998 -10.63576 -10.34396 -9.83542 -9.69873 -9.67600 -9.26648 -8.44124 -8.05961 -7.33353 -6.04050 -4.05327 2.34317 3.32418 3.37786 3.39009 3.44159 3.47848 4.42577 4.89501 4.96054 5.28609 5.32381 5.48396 5.55090 5.74957 5.90489 5.98380 6.01738 6.20763 6.31742 6.47716 6.63755 6.75783 7.07225 7.15645 7.25619 7.60862 7.79517 8.05459 8.12671 8.33982 8.48605 9.02534 9.59236 11.06536 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.035356 B = 0.008701 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.745580 B = 3217.251951 C = 3754.587311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.529 5.529 4 C 0.191 3.809 5 C -0.505 4.505 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.133 3.867 14 C 0.005 3.995 15 C -0.018 4.018 16 N -0.497 5.497 17 C 0.166 3.834 18 N -0.571 5.571 19 H 0.414 0.586 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.021 0.979 24 H 0.050 0.950 25 H -0.011 1.011 26 H 0.039 0.961 27 H 0.261 0.739 28 H 0.107 0.893 29 H 0.026 0.974 30 H 0.169 0.831 31 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 -8.987 7.401 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.254 5.254 4 C 0.067 3.933 5 C -0.544 4.544 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.004 3.996 14 C -0.110 4.110 15 C -0.166 4.166 16 N -0.217 5.217 17 C -0.118 4.118 18 N -0.175 5.175 19 H 0.251 0.749 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.007 0.993 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.044 0.956 30 H 0.186 0.814 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.346 -8.329 8.394 12.289 hybrid contribution 0.345 -0.238 -1.700 1.751 sum 3.692 -8.566 6.694 11.481 Atomic orbital electron populations 1.21727 0.95235 0.99926 1.03121 1.22034 0.96483 0.91084 0.98290 1.62208 1.14543 1.14130 1.34551 1.19819 0.96631 0.94428 0.82469 1.21173 1.46285 0.90492 0.96463 0.91684 1.24987 0.95372 0.99051 0.95191 1.69955 1.47679 1.35327 1.01063 0.86504 0.77729 0.85152 0.78113 1.20735 1.21323 1.19641 1.20476 0.90717 1.02076 0.86347 1.21560 1.07920 0.83357 0.98205 1.22066 1.07581 0.99803 0.87101 1.70230 1.19330 1.01002 1.31127 1.24790 1.07270 0.97368 0.82327 1.43422 1.56612 1.08582 1.08935 0.74898 0.92344 0.91790 0.93726 0.96119 0.93132 0.99299 0.94293 0.92930 0.87490 0.95555 0.81381 0.78245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.99 37.16 0.37 -2.06 16 2 C 0.05 0.87 5.55 -3.82 -0.02 0.85 16 3 N -0.53 -11.02 4.37 -237.52 -1.04 -12.06 16 4 C 0.19 4.80 4.59 -4.98 -0.02 4.78 16 5 C -0.51 -13.86 8.61 -34.44 -0.30 -14.15 16 6 H 0.06 1.77 7.66 -52.49 -0.40 1.37 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.13 2.45 5.35 -4.98 -0.03 2.42 16 14 C 0.01 0.09 5.99 -81.60 -0.49 -0.40 16 15 C -0.02 -0.31 11.79 -17.81 -0.21 -0.52 16 16 N -0.50 -8.34 11.25 -14.67 -0.17 -8.50 16 17 C 0.17 2.16 13.04 -90.37 -1.18 0.99 16 18 N -0.57 -7.42 5.14 -10.30 -0.05 -7.48 16 19 H 0.41 4.15 8.38 -40.82 -0.34 3.81 16 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 24 H 0.05 0.78 5.53 -51.93 -0.29 0.49 16 25 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 26 H 0.04 1.05 6.24 -51.92 -0.32 0.73 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.11 2.11 7.32 -51.93 -0.38 1.73 16 29 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 31 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -31.22 261.80 -7.72 -38.94 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.16 Total: 0.99 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.97 Total: -6.66 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.52 Total: -53.63 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.22 -7.72 -38.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308366053.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.312 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds