Wall clock time and date at job start Sun Mar 29 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.46968 * 2 1 4 4 C 1.46897 * 111.00330 * 287.99226 * 3 2 1 5 5 C 1.50697 * 109.47175 * 160.36261 * 4 3 2 6 6 H 1.07993 * 120.00303 * 4.66240 * 5 4 3 7 7 C 1.37879 * 119.99807 * 184.66543 * 5 4 3 8 8 N 1.31518 * 120.00287 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00047 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47227 * 89.99548 * 9 7 5 11 11 H 1.48499 * 109.47322 * 210.00165 * 9 7 5 12 12 H 1.48506 * 109.47114 * 329.99981 * 9 7 5 13 13 C 1.46901 * 110.99702 * 164.04041 * 3 2 1 14 14 C 1.50699 * 109.47041 * 293.95423 * 13 3 2 15 15 C 1.34668 * 126.59125 * 265.04137 * 14 13 3 16 16 N 1.34123 * 108.02125 * 179.74712 * 15 14 13 17 17 C 1.30503 * 109.25679 * 0.36777 * 16 15 14 18 18 N 1.35044 * 108.69750 * 359.63390 * 17 16 15 19 19 H 0.97001 * 126.39913 * 180.24804 * 18 17 16 20 20 H 1.09000 * 109.46786 * 299.38410 * 1 2 3 21 21 H 1.09006 * 109.46745 * 59.38292 * 1 2 3 22 22 H 1.08996 * 109.46893 * 179.38039 * 1 2 3 23 23 H 1.09000 * 109.46799 * 239.99896 * 2 1 3 24 24 H 1.08995 * 109.46839 * 120.00184 * 2 1 3 25 25 H 1.08995 * 109.47108 * 280.36732 * 4 3 2 26 26 H 1.09007 * 109.47121 * 40.36137 * 4 3 2 27 27 H 0.97000 * 119.99672 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46946 * 173.95739 * 13 3 2 29 29 H 1.08999 * 109.47049 * 53.95521 * 13 3 2 30 30 H 1.07996 * 125.98954 * 359.92715 * 15 14 13 31 31 H 1.07997 * 125.64779 * 179.89332 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7958 2.0226 -1.3043 5 6 1.8471 3.5204 -1.1467 6 1 2.1023 3.9544 -0.1913 7 6 1.5683 4.3367 -2.2223 8 7 1.2580 3.8082 -3.3860 9 14 1.6312 6.1934 -2.0268 10 1 3.0016 6.6771 -2.3321 11 1 0.6643 6.8227 -2.9618 12 1 1.2777 6.5564 -0.6309 13 6 3.4384 1.4418 0.3771 14 6 3.5947 1.0062 1.8113 15 6 3.6435 1.8072 2.8927 16 7 3.7834 1.0313 3.9778 17 6 3.8311 -0.2197 3.6091 18 7 3.7137 -0.2797 2.2651 19 1 3.7134 -1.0839 1.7227 20 1 -0.3633 0.5042 0.8955 21 1 -0.3633 0.5234 -0.8845 22 1 -0.3633 -1.0276 -0.0111 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.5700 1.7039 -2.0022 26 1 0.8182 1.7309 -1.6883 27 1 1.0622 4.3826 -4.1427 28 1 3.8033 2.4628 0.2657 29 1 4.0129 0.7780 -0.2690 30 1 3.5782 2.8851 2.8875 31 1 3.9415 -1.0668 4.2698 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308366053.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:20 Heat of formation + Delta-G solvation = 38.478987 kcal Electronic energy + Delta-G solvation = -13721.913343 eV Core-core repulsion = 11424.466037 eV Total energy + Delta-G solvation = -2297.447305 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.91295 -38.59541 -34.78143 -33.38191 -32.47815 -30.87649 -28.55859 -26.01762 -24.47672 -22.34303 -22.09356 -21.35592 -18.69248 -18.56967 -16.88285 -16.43087 -15.87476 -15.60882 -15.29211 -14.85939 -14.49698 -14.26630 -13.98264 -13.40869 -13.18763 -12.91359 -12.65662 -12.60121 -12.31530 -12.12600 -11.60211 -11.30814 -10.94450 -10.85241 -10.57323 -9.33791 -9.00038 -8.18026 -6.27026 1.14989 1.42902 1.43878 1.55683 2.25693 2.31359 2.42732 3.14100 3.39600 3.84292 4.06224 4.13393 4.17195 4.41001 4.59056 4.65887 4.74976 4.80544 4.90115 4.99665 5.18279 5.25348 5.32023 5.40155 5.68988 5.81358 6.09307 6.34010 6.60755 6.62701 6.88300 7.18083 7.42384 8.92309 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.035356 B = 0.008701 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.745580 B = 3217.251951 C = 3754.587311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 N -0.541 5.541 4 C 0.207 3.793 5 C -0.519 4.519 6 H 0.061 0.939 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.140 3.860 14 C -0.006 4.006 15 C -0.036 4.036 16 N -0.536 5.536 17 C 0.194 3.806 18 N -0.559 5.559 19 H 0.430 0.570 20 H 0.050 0.950 21 H 0.034 0.966 22 H 0.079 0.921 23 H 0.024 0.976 24 H 0.079 0.921 25 H -0.034 1.034 26 H 0.016 0.984 27 H 0.264 0.736 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.159 0.841 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -10.150 8.787 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 N -0.266 5.266 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.079 0.921 7 C -0.194 4.194 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.011 3.989 14 C -0.122 4.122 15 C -0.183 4.183 16 N -0.256 5.256 17 C -0.090 4.090 18 N -0.165 5.165 19 H 0.271 0.729 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.098 0.902 23 H 0.042 0.958 24 H 0.097 0.903 25 H -0.017 1.017 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.177 0.823 31 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.735 -9.517 9.779 14.148 hybrid contribution 0.249 0.014 -2.059 2.074 sum 3.985 -9.503 7.720 12.876 Atomic orbital electron populations 1.21699 0.94900 1.01680 1.01295 1.22144 0.96779 0.89348 0.99694 1.62107 1.16414 1.16304 1.31739 1.19435 0.94466 0.93837 0.84119 1.21484 1.45991 0.91963 0.96337 0.92053 1.25834 0.94943 1.03804 0.94831 1.70069 1.48615 1.37031 1.01835 0.85463 0.78056 0.79448 0.78165 1.19790 1.20890 1.19144 1.20268 0.89310 1.01295 0.88053 1.21044 1.09639 0.84912 0.96629 1.22106 1.08220 0.99989 0.87987 1.70234 1.21491 1.02601 1.31232 1.25758 1.03193 0.97538 0.82479 1.43321 1.55901 1.07961 1.09279 0.72901 0.93059 0.94642 0.90171 0.95805 0.90317 1.01680 0.96621 0.92757 0.89721 0.94563 0.82323 0.73297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.99 71.98 0.72 -3.85 16 2 C 0.05 1.64 5.55 86.31 0.48 2.11 16 3 N -0.54 -22.63 4.37 -905.36 -3.96 -26.59 16 4 C 0.21 10.74 4.59 85.56 0.39 11.13 16 5 C -0.52 -29.14 8.61 25.60 0.22 -28.92 16 6 H 0.06 3.41 7.66 -2.91 -0.02 3.39 16 7 C 0.00 0.21 5.46 84.65 0.46 0.67 16 8 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 9 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 C 0.14 5.14 5.35 85.56 0.46 5.60 16 14 C -0.01 -0.19 5.99 40.95 0.25 0.05 16 15 C -0.04 -1.22 11.79 83.52 0.98 -0.24 16 16 N -0.54 -16.87 11.25 -200.32 -2.25 -19.12 16 17 C 0.19 4.32 13.04 180.26 2.35 6.67 16 18 N -0.56 -12.73 5.14 -186.49 -0.96 -13.68 16 19 H 0.43 6.91 8.38 -92.71 -0.78 6.14 16 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.03 1.36 6.52 -2.38 -0.02 1.34 16 22 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 24 H 0.08 2.20 5.53 -2.39 -0.01 2.18 16 25 H -0.03 -1.91 8.00 -2.39 -0.02 -1.93 16 26 H 0.02 0.88 6.24 -2.38 -0.01 0.87 16 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.08 3.46 7.32 -2.39 -0.02 3.44 16 29 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 30 H 0.16 5.50 8.06 -2.91 -0.02 5.48 16 31 H 0.25 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -68.28 261.80 1.80 -66.49 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.35 Total: 8.70 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.31 Total: -6.76 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -6.89 Total: -114.83 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.28 1.80 -66.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308366053.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.965 kcal (2) G-P(sol) polarization free energy of solvation -68.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds