Wall clock time and date at job start Sun Mar 29 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39872 * 126.03910 * 2 1 4 4 N 1.30842 * 108.19764 * 179.81755 * 3 2 1 5 5 N 1.40076 * 108.20657 * 0.44422 * 4 3 2 6 6 C 1.46509 * 126.03825 * 179.73880 * 5 4 3 7 7 C 1.34951 * 107.93039 * 359.71277 * 5 4 3 8 8 C 1.50693 * 126.13128 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.47043 * 90.03063 * 8 7 5 10 10 C 1.46900 * 110.99798 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46805 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99911 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00174 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99485 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47333 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46958 * 120.00493 * 15 13 11 18 18 H 1.48499 * 109.47257 * 240.00101 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 22 22 H 1.07999 * 125.89879 * 0.02562 * 3 2 1 23 23 H 1.08993 * 109.47101 * 269.97372 * 6 5 4 24 24 H 1.09001 * 109.46460 * 29.97589 * 6 5 4 25 25 H 1.09002 * 109.46907 * 149.96893 * 6 5 4 26 26 H 1.08998 * 109.47404 * 210.02638 * 8 7 5 27 27 H 1.09005 * 109.47439 * 330.03098 * 8 7 5 28 28 H 1.00906 * 110.99676 * 303.95419 * 9 8 7 29 29 H 1.09001 * 109.47124 * 299.99184 * 10 9 8 30 30 H 1.08997 * 109.47191 * 60.00021 * 10 9 8 31 31 H 0.96998 * 119.99701 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7301 0.0040 5 7 3.5844 -0.6706 -0.0037 6 6 4.7746 -1.5249 -0.0079 7 6 2.3031 -1.0942 -0.0060 8 6 1.8416 -2.5287 -0.0143 9 7 1.6912 -3.0028 1.3680 10 6 1.2420 -4.4011 1.3990 11 6 1.1000 -4.8514 2.8301 12 1 1.3217 -4.1674 3.6360 13 6 0.6871 -6.1366 3.1108 14 7 0.4176 -6.9697 2.1294 15 14 0.5117 -6.6950 4.8846 16 1 0.8730 -5.5774 5.7934 17 1 -0.8931 -7.1042 5.1382 18 1 1.4153 -7.8470 5.1326 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 1.9951 2.1578 0.0004 23 1 5.0699 -1.7315 -1.0366 24 1 5.5886 -1.0163 0.5087 25 1 4.5507 -2.4624 0.5012 26 1 0.8833 -2.5991 -0.5288 27 1 2.5777 -3.1443 -0.5315 28 1 2.5499 -2.8876 1.8852 29 1 0.2796 -4.4848 0.8942 30 1 1.9743 -5.0293 0.8918 31 1 0.1275 -7.8739 2.3268 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308366054.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:30 Heat of formation + Delta-G solvation = 68.642565 kcal Electronic energy + Delta-G solvation = -13414.122408 eV Core-core repulsion = 11117.983094 eV Total energy + Delta-G solvation = -2296.139315 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.03106 -35.52758 -33.45243 -32.73157 -31.16850 -28.47639 -26.82003 -25.09434 -24.00569 -21.53300 -20.57641 -19.11679 -16.65655 -15.97314 -15.40546 -14.93959 -14.49987 -14.14122 -13.51069 -13.11403 -12.98104 -12.77709 -12.53978 -12.07111 -11.99615 -11.62866 -11.44062 -11.18352 -10.77994 -10.70573 -10.31805 -10.03587 -9.28539 -9.03598 -8.54629 -7.96987 -7.43789 -6.09381 -4.11566 2.10059 2.73265 3.04750 3.27873 3.35515 3.40866 4.39044 4.71712 4.92668 5.22661 5.25472 5.26877 5.33887 5.48916 5.51589 5.68205 5.80667 5.94867 6.15857 6.18184 6.40540 6.58377 6.94818 7.09488 7.26991 7.28992 7.70363 7.94603 8.03013 8.23997 8.47481 8.97408 9.53812 11.01717 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044565 B = 0.006685 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.146425 B = 4187.226552 C = 4391.803778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.229 4.229 3 C 0.045 3.955 4 N -0.308 5.308 5 N -0.375 5.375 6 C 0.102 3.898 7 C 0.100 3.900 8 C 0.119 3.881 9 N -0.678 5.678 10 C 0.194 3.806 11 C -0.515 4.515 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.054 0.946 22 H 0.178 0.822 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.029 0.971 28 H 0.328 0.672 29 H 0.032 0.968 30 H -0.012 1.012 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 10.477 -5.232 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.240 4.240 3 C -0.141 4.141 4 N -0.129 5.129 5 N -0.158 5.158 6 C -0.040 4.040 7 C -0.028 4.028 8 C -0.012 4.012 9 N -0.309 5.309 10 C 0.068 3.932 11 C -0.553 4.553 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.211 1.211 19 H 0.082 0.918 20 H 0.079 0.921 21 H 0.073 0.927 22 H 0.195 0.805 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.144 0.856 29 H 0.050 0.950 30 H 0.005 0.995 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.806 10.801 -5.196 12.913 hybrid contribution -0.046 -1.159 0.633 1.321 sum 4.760 9.642 -4.564 11.681 Atomic orbital electron populations 1.20015 0.89282 1.01284 1.01898 1.19837 0.97095 0.91059 1.16051 1.23678 0.90113 0.99553 1.00728 1.77233 1.21334 0.88739 1.25571 1.48332 1.05234 1.04534 1.57675 1.21802 0.85687 0.93506 1.03004 1.21031 0.84087 0.97114 1.00542 1.20506 1.00376 0.86628 0.93677 1.60721 1.35787 1.25655 1.08777 1.19614 0.95357 0.80611 0.97645 1.21191 1.45271 0.96839 0.92046 0.91857 1.24983 0.95362 0.96560 0.97599 1.69967 1.46192 1.06261 1.31259 0.86414 0.77755 0.78531 0.84566 1.19635 1.20896 1.21068 0.91759 0.92114 0.92714 0.80465 0.91087 0.89453 0.89516 0.89030 0.95298 0.85602 0.95004 0.99458 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.16 36.01 0.37 -0.55 16 2 C -0.23 -3.62 6.10 -105.05 -0.64 -4.26 16 3 C 0.04 0.67 11.96 -17.36 -0.21 0.46 16 4 N -0.31 -5.05 12.58 30.63 0.39 -4.67 16 5 N -0.37 -5.94 4.01 -63.88 -0.26 -6.20 16 6 C 0.10 1.23 11.10 59.85 0.66 1.90 16 7 C 0.10 1.66 6.44 -82.26 -0.53 1.13 16 8 C 0.12 2.10 5.48 -4.98 -0.03 2.07 16 9 N -0.68 -14.28 6.48 -116.34 -0.75 -15.04 16 10 C 0.19 4.92 5.44 -4.97 -0.03 4.90 16 11 C -0.51 -14.35 9.32 -34.44 -0.32 -14.67 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 15 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 20 H 0.06 0.84 7.15 -51.93 -0.37 0.47 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.09 1.03 7.66 -51.93 -0.40 0.64 16 26 H 0.09 1.59 7.15 -51.93 -0.37 1.22 16 27 H 0.03 0.49 7.72 -51.93 -0.40 0.09 16 28 H 0.33 6.73 8.71 -39.29 -0.34 6.38 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 30 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 270.09 15.07 4.07 4.07 Total: -1.00 -31.25 270.09 -6.05 -37.29 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.39 Total: 1.24 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.82 Total: -7.53 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.11 Total: -51.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.25 -6.05 -37.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308366054.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.937 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds