Wall clock time and date at job start Sun Mar 29 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39872 * 126.03910 * 2 1 4 4 N 1.30842 * 108.19764 * 179.81755 * 3 2 1 5 5 N 1.40076 * 108.20657 * 0.44422 * 4 3 2 6 6 C 1.46509 * 126.03825 * 179.73880 * 5 4 3 7 7 C 1.34951 * 107.93039 * 359.71277 * 5 4 3 8 8 C 1.50693 * 126.13128 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.47043 * 90.03063 * 8 7 5 10 10 C 1.46900 * 110.99798 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46805 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99911 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00174 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99485 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47333 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46958 * 120.00493 * 15 13 11 18 18 H 1.48499 * 109.47257 * 240.00101 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 22 22 H 1.07999 * 125.89879 * 0.02562 * 3 2 1 23 23 H 1.08993 * 109.47101 * 269.97372 * 6 5 4 24 24 H 1.09001 * 109.46460 * 29.97589 * 6 5 4 25 25 H 1.09002 * 109.46907 * 149.96893 * 6 5 4 26 26 H 1.08998 * 109.47404 * 210.02638 * 8 7 5 27 27 H 1.09005 * 109.47439 * 330.03098 * 8 7 5 28 28 H 1.00906 * 110.99676 * 303.95419 * 9 8 7 29 29 H 1.09001 * 109.47124 * 299.99184 * 10 9 8 30 30 H 1.08997 * 109.47191 * 60.00021 * 10 9 8 31 31 H 0.96998 * 119.99701 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7301 0.0040 5 7 3.5844 -0.6706 -0.0037 6 6 4.7746 -1.5249 -0.0079 7 6 2.3031 -1.0942 -0.0060 8 6 1.8416 -2.5287 -0.0143 9 7 1.6912 -3.0028 1.3680 10 6 1.2420 -4.4011 1.3990 11 6 1.1000 -4.8514 2.8301 12 1 1.3217 -4.1674 3.6360 13 6 0.6871 -6.1366 3.1108 14 7 0.4176 -6.9697 2.1294 15 14 0.5117 -6.6950 4.8846 16 1 0.8730 -5.5774 5.7934 17 1 -0.8931 -7.1042 5.1382 18 1 1.4153 -7.8470 5.1326 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 1.9951 2.1578 0.0004 23 1 5.0699 -1.7315 -1.0366 24 1 5.5886 -1.0163 0.5087 25 1 4.5507 -2.4624 0.5012 26 1 0.8833 -2.5991 -0.5288 27 1 2.5777 -3.1443 -0.5315 28 1 2.5499 -2.8876 1.8852 29 1 0.2796 -4.4848 0.8942 30 1 1.9743 -5.0293 0.8918 31 1 0.1275 -7.8739 2.3268 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308366054.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:30 Heat of formation + Delta-G solvation = 46.840062 kcal Electronic energy + Delta-G solvation = -13415.067836 eV Core-core repulsion = 11117.983094 eV Total energy + Delta-G solvation = -2297.084742 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.22676 -37.24771 -34.75591 -34.51982 -32.60138 -29.87817 -28.42048 -26.36182 -25.54617 -23.47887 -21.72188 -20.40359 -18.59935 -17.32321 -16.82736 -16.59285 -16.23569 -15.30838 -15.06281 -14.50711 -14.37965 -14.11825 -13.88256 -13.51240 -13.23159 -13.06370 -12.94205 -12.74015 -12.65223 -12.40695 -12.04866 -11.50926 -11.33658 -10.67870 -10.25890 -9.26642 -9.11554 -8.23754 -6.34363 0.85850 1.41206 1.42574 1.55765 1.62954 1.86629 2.40067 3.10252 3.52661 3.66419 3.78799 4.08208 4.32967 4.37619 4.49398 4.52307 4.60857 4.67723 4.98938 5.04335 5.05978 5.23273 5.30786 5.41542 5.58917 5.83335 5.97228 6.09089 6.35287 6.59862 6.76202 6.84202 7.36439 8.87767 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044565 B = 0.006685 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.146425 B = 4187.226552 C = 4391.803778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.237 4.237 3 C 0.046 3.954 4 N -0.326 5.326 5 N -0.380 5.380 6 C 0.094 3.906 7 C 0.080 3.920 8 C 0.127 3.873 9 N -0.677 5.677 10 C 0.210 3.790 11 C -0.535 4.535 12 H 0.061 0.939 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.970 3.030 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.277 1.277 19 H 0.056 0.944 20 H 0.053 0.947 21 H 0.083 0.917 22 H 0.212 0.788 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.037 0.963 28 H 0.331 0.669 29 H 0.008 0.992 30 H -0.031 1.031 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 11.384 -4.676 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.249 4.249 3 C -0.139 4.139 4 N -0.147 5.147 5 N -0.163 5.163 6 C -0.047 4.047 7 C -0.048 4.048 8 C -0.004 4.004 9 N -0.308 5.308 10 C 0.082 3.918 11 C -0.574 4.574 12 H 0.079 0.921 13 C -0.193 4.193 14 N -0.572 5.572 15 Si 0.795 3.205 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.202 1.202 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.101 0.899 22 H 0.229 0.771 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.055 0.945 28 H 0.148 0.852 29 H 0.026 0.974 30 H -0.014 1.014 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.021 11.722 -4.648 13.573 hybrid contribution -0.088 -1.386 0.401 1.445 sum 4.934 10.336 -4.248 12.216 Atomic orbital electron populations 1.20041 0.88162 1.02422 1.01653 1.20216 0.98114 0.91225 1.15356 1.24230 0.89323 1.00875 0.99457 1.77200 1.22329 0.89051 1.26141 1.48608 1.05672 1.04691 1.57363 1.22044 0.85071 0.93132 1.04409 1.20909 0.85056 0.96556 1.02255 1.20394 1.00732 0.87631 0.91632 1.60566 1.36203 1.22852 1.11216 1.19248 0.93707 0.82634 0.96173 1.21522 1.45525 0.97285 0.93029 0.92071 1.25878 0.94765 0.96604 1.02097 1.70076 1.46791 1.06738 1.33548 0.85320 0.77900 0.78188 0.79104 1.18973 1.20339 1.20232 0.92567 0.92791 0.89855 0.77101 0.89301 0.88052 0.89735 0.89130 0.94465 0.85206 0.97378 1.01357 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.16 71.24 0.72 -0.96 16 2 C -0.24 -7.15 6.10 -20.14 -0.12 -7.27 16 3 C 0.05 1.27 11.96 85.24 1.02 2.29 16 4 N -0.33 -10.12 12.58 -57.02 -0.72 -10.84 16 5 N -0.38 -11.57 4.01 -356.02 -1.43 -13.00 16 6 C 0.09 2.16 11.10 127.77 1.42 3.58 16 7 C 0.08 2.60 6.44 41.40 0.27 2.86 16 8 C 0.13 4.45 5.48 85.55 0.47 4.92 16 9 N -0.68 -28.67 6.48 -521.98 -3.38 -32.05 16 10 C 0.21 10.86 5.44 85.56 0.47 11.33 16 11 C -0.54 -30.01 9.32 25.60 0.24 -29.77 16 12 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 13 C 0.01 0.29 5.46 84.65 0.46 0.75 16 14 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 15 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.05 1.46 7.15 -2.39 -0.02 1.44 16 21 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16 22 H 0.21 4.03 8.06 -2.91 -0.02 4.01 16 23 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 1.96 7.66 -2.39 -0.02 1.94 16 26 H 0.09 3.18 7.15 -2.39 -0.02 3.16 16 27 H 0.04 1.25 7.72 -2.38 -0.02 1.23 16 28 H 0.33 13.60 8.71 -89.69 -0.78 12.82 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -65.55 270.09 2.06 -63.49 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.34 Total: 13.69 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.94 Total: -12.29 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -5.24 Total: -110.61 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -65.55 2.06 -63.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308366054.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.335 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds