Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48500 * 109.47033 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46808 * 299.99720 * 3 2 1 6 6 H 1.48493 * 109.47127 * 59.99755 * 3 2 1 7 7 C 1.37876 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00218 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00097 * 293.95148 * 10 9 7 12 12 C 1.53001 * 109.47238 * 169.99979 * 11 10 9 13 13 C 1.53000 * 117.50223 * 185.00341 * 12 11 10 14 14 C 1.52997 * 117.49889 * 116.37603 * 12 11 10 15 15 C 1.46904 * 110.99885 * 169.99989 * 10 9 7 16 16 C 1.53781 * 113.61258 * 36.44963 * 15 10 9 17 17 C 1.53782 * 87.07891 * 220.01755 * 16 15 10 18 18 C 1.53777 * 87.08223 * 25.43410 * 17 16 15 19 19 H 0.96998 * 119.99978 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47067 * 59.99978 * 9 7 2 21 21 H 1.09001 * 109.47171 * 300.00016 * 9 7 2 22 22 H 1.08999 * 109.46946 * 50.00639 * 11 10 9 23 23 H 1.08991 * 109.47461 * 290.00176 * 11 10 9 24 24 H 1.09002 * 115.55911 * 330.69031 * 12 11 10 25 25 H 1.08990 * 117.49990 * 145.01974 * 13 12 11 26 26 H 1.09004 * 117.49237 * 359.97438 * 13 12 11 27 27 H 1.08999 * 117.49685 * 0.02562 * 14 12 11 28 28 H 1.08999 * 117.52022 * 214.97106 * 14 12 11 29 29 H 1.08997 * 112.84979 * 167.75657 * 15 10 9 30 30 H 1.08994 * 113.61674 * 334.56792 * 16 15 10 31 31 H 1.09000 * 113.60987 * 105.47217 * 16 15 10 32 32 H 1.08995 * 113.61567 * 270.88493 * 17 16 15 33 33 H 1.09001 * 113.61078 * 139.98376 * 17 16 15 34 34 H 1.08999 * 113.61465 * 220.01543 * 18 17 16 35 35 H 1.09007 * 113.69111 * 89.12728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9718 -3.6546 -1.2509 12 6 4.1162 -4.6615 -1.1178 13 6 5.1058 -4.7641 -2.2801 14 6 4.0920 -5.8840 -2.0373 15 6 1.5209 -4.8934 0.2400 16 6 0.1323 -4.9797 -0.4151 17 6 -0.3400 -5.6912 0.8638 18 6 0.7988 -4.9620 1.5959 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 3.3805 -2.6655 -1.4577 23 1 2.3167 -3.9553 -2.0684 24 1 4.5080 -4.7975 -0.1097 25 1 6.1485 -4.9676 -2.0368 26 1 4.9413 -4.1145 -3.1399 27 1 3.2611 -5.9709 -2.7374 28 1 4.4680 -6.8246 -1.6346 29 1 2.1546 -5.7572 0.0386 30 1 -0.3369 -4.0087 -0.5733 31 1 0.1065 -5.6129 -1.3019 32 1 -0.2163 -6.7736 0.8323 33 1 -1.3345 -5.3871 1.1906 34 1 1.3110 -5.5808 2.3327 35 1 0.5130 -3.9859 1.9883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308368048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = 45.501033 kcal Electronic energy + Delta-G solvation = -14216.008804 eV Core-core repulsion = 12022.406341 eV Total energy + Delta-G solvation = -2193.602463 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.07962 -36.88281 -33.98846 -32.13552 -27.42752 -25.87453 -25.02811 -23.37493 -22.10516 -21.26494 -19.92432 -18.05671 -16.64924 -15.42000 -15.04415 -14.76981 -14.28300 -14.03764 -13.32999 -12.73604 -12.36299 -12.04306 -11.78034 -11.58249 -11.25775 -11.17298 -10.90091 -10.67647 -10.46670 -10.36581 -10.02035 -9.98536 -9.84717 -9.49199 -9.36969 -9.03904 -8.39619 -7.08133 -6.00612 -4.01102 3.32021 3.39611 3.44738 4.14230 4.44680 4.83032 5.14773 5.26015 5.26386 5.28876 5.35384 5.40367 5.51132 5.67616 5.83902 5.91640 6.08461 6.15113 6.18908 6.31823 6.35010 6.37292 6.40120 6.54513 6.58709 6.74488 6.84553 6.99597 7.37152 7.45902 7.85494 8.17067 8.30645 8.62210 9.07622 9.62947 11.10104 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023959 B = 0.010901 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.392705 B = 2568.024911 C = 3500.122239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.191 3.809 10 N -0.525 5.525 11 C 0.094 3.906 12 C -0.134 4.134 13 C -0.184 4.184 14 C -0.191 4.191 15 C 0.066 3.934 16 C -0.181 4.181 17 C -0.141 4.141 18 C -0.132 4.132 19 H 0.260 0.740 20 H -0.006 1.006 21 H 0.035 0.965 22 H 0.087 0.913 23 H 0.020 0.980 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -10.215 -1.716 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.247 5.247 11 C -0.034 4.034 12 C -0.153 4.153 13 C -0.222 4.222 14 C -0.228 4.228 15 C -0.043 4.043 16 C -0.220 4.220 17 C -0.179 4.179 18 C -0.170 4.170 19 H 0.069 0.931 20 H 0.012 0.988 21 H 0.053 0.947 22 H 0.105 0.895 23 H 0.039 0.961 24 H 0.125 0.875 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.138 -9.992 -1.327 10.896 hybrid contribution -0.223 0.749 -0.700 1.049 sum 3.915 -9.243 -2.026 10.240 Atomic orbital electron populations 1.69965 1.06009 1.26565 1.51307 1.24978 0.94845 0.99235 0.95566 0.86483 0.80160 0.83595 0.77457 1.19650 1.21183 1.21062 1.21260 0.93576 0.90070 1.49612 0.91853 1.19780 0.90363 0.86996 0.96219 1.62039 1.27380 1.02535 1.32765 1.21512 0.92607 0.98443 0.90848 1.22464 0.99382 0.97991 0.95433 1.22899 0.95574 1.02494 1.01184 1.23017 1.02078 0.93425 1.04286 1.23101 0.91791 0.93728 0.95723 1.23695 1.00191 1.01635 0.96520 1.22679 0.98669 0.98660 0.97913 1.23076 0.96297 1.01026 0.96616 0.93058 0.98792 0.94684 0.89515 0.96141 0.87483 0.89334 0.89080 0.89359 0.89569 0.89342 0.88571 0.93000 0.91170 0.91953 0.92382 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.19 8.37 -34.44 -0.29 -14.48 16 8 H 0.06 1.77 7.18 -52.48 -0.38 1.40 16 9 C 0.19 4.91 3.38 -4.97 -0.02 4.90 16 10 N -0.52 -11.32 4.62 -227.11 -1.05 -12.37 16 11 C 0.09 1.85 5.09 -3.82 -0.02 1.83 16 12 C -0.13 -2.16 4.76 -90.62 -0.43 -2.59 16 13 C -0.18 -2.52 10.25 -26.73 -0.27 -2.80 16 14 C -0.19 -2.59 10.06 -26.73 -0.27 -2.86 16 15 C 0.07 1.22 3.67 -66.90 -0.25 0.98 16 16 C -0.18 -3.24 7.34 -25.92 -0.19 -3.43 16 17 C -0.14 -2.20 8.08 -25.92 -0.21 -2.41 16 18 C -0.13 -2.31 7.57 -25.92 -0.20 -2.50 16 19 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 20 H -0.01 -0.15 6.67 -51.93 -0.35 -0.50 16 21 H 0.04 0.96 6.08 -51.93 -0.32 0.65 16 22 H 0.09 1.89 6.65 -51.93 -0.35 1.54 16 23 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 24 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.50 7.05 -51.93 -0.37 1.13 16 30 H 0.10 2.01 5.69 -51.93 -0.30 1.72 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.81 6.31 -51.92 -0.33 1.48 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -28.66 277.75 -9.10 -37.76 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.72 Total: 1.52 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.24 Total: -21.92 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.31 Total: -38.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.66 -9.10 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308368048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.266 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds