Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48500 * 109.47033 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46808 * 299.99720 * 3 2 1 6 6 H 1.48493 * 109.47127 * 59.99755 * 3 2 1 7 7 C 1.37876 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00218 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00097 * 293.95148 * 10 9 7 12 12 C 1.53001 * 109.47238 * 169.99979 * 11 10 9 13 13 C 1.53000 * 117.50223 * 185.00341 * 12 11 10 14 14 C 1.52997 * 117.49889 * 116.37603 * 12 11 10 15 15 C 1.46904 * 110.99885 * 169.99989 * 10 9 7 16 16 C 1.53781 * 113.61258 * 36.44963 * 15 10 9 17 17 C 1.53782 * 87.07891 * 220.01755 * 16 15 10 18 18 C 1.53777 * 87.08223 * 25.43410 * 17 16 15 19 19 H 0.96998 * 119.99978 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47067 * 59.99978 * 9 7 2 21 21 H 1.09001 * 109.47171 * 300.00016 * 9 7 2 22 22 H 1.08999 * 109.46946 * 50.00639 * 11 10 9 23 23 H 1.08991 * 109.47461 * 290.00176 * 11 10 9 24 24 H 1.09002 * 115.55911 * 330.69031 * 12 11 10 25 25 H 1.08990 * 117.49990 * 145.01974 * 13 12 11 26 26 H 1.09004 * 117.49237 * 359.97438 * 13 12 11 27 27 H 1.08999 * 117.49685 * 0.02562 * 14 12 11 28 28 H 1.08999 * 117.52022 * 214.97106 * 14 12 11 29 29 H 1.08997 * 112.84979 * 167.75657 * 15 10 9 30 30 H 1.08994 * 113.61674 * 334.56792 * 16 15 10 31 31 H 1.09000 * 113.60987 * 105.47217 * 16 15 10 32 32 H 1.08995 * 113.61567 * 270.88493 * 17 16 15 33 33 H 1.09001 * 113.61078 * 139.98376 * 17 16 15 34 34 H 1.08999 * 113.61465 * 220.01543 * 18 17 16 35 35 H 1.09007 * 113.69111 * 89.12728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9718 -3.6546 -1.2509 12 6 4.1162 -4.6615 -1.1178 13 6 5.1058 -4.7641 -2.2801 14 6 4.0920 -5.8840 -2.0373 15 6 1.5209 -4.8934 0.2400 16 6 0.1323 -4.9797 -0.4151 17 6 -0.3400 -5.6912 0.8638 18 6 0.7988 -4.9620 1.5959 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 3.3805 -2.6655 -1.4577 23 1 2.3167 -3.9553 -2.0684 24 1 4.5080 -4.7975 -0.1097 25 1 6.1485 -4.9676 -2.0368 26 1 4.9413 -4.1145 -3.1399 27 1 3.2611 -5.9709 -2.7374 28 1 4.4680 -6.8246 -1.6346 29 1 2.1546 -5.7572 0.0386 30 1 -0.3369 -4.0087 -0.5733 31 1 0.1065 -5.6129 -1.3019 32 1 -0.2163 -6.7736 0.8323 33 1 -1.3345 -5.3871 1.1906 34 1 1.3110 -5.5808 2.3327 35 1 0.5130 -3.9859 1.9883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308368048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = 28.668688 kcal Electronic energy + Delta-G solvation = -14216.738709 eV Core-core repulsion = 12022.406341 eV Total energy + Delta-G solvation = -2194.332369 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60193 -38.12239 -35.78242 -34.13063 -29.40744 -27.45220 -26.48744 -25.18849 -23.19361 -22.91462 -21.26832 -19.65981 -18.60232 -17.04386 -16.77507 -16.15253 -16.02314 -15.47765 -14.89967 -14.40844 -14.00541 -13.69072 -13.55580 -13.09983 -12.94568 -12.59931 -12.50340 -12.31350 -12.16246 -12.02753 -11.58307 -11.34499 -11.33026 -11.17284 -10.87692 -10.69202 -10.53917 -8.84897 -8.19759 -6.29025 1.38793 1.39598 1.53200 2.39790 2.96605 3.11902 3.29599 3.83535 3.86643 3.96045 4.09541 4.11850 4.18120 4.23519 4.51906 4.75904 4.78888 4.81390 4.88944 4.90105 4.98136 5.03190 5.07515 5.09755 5.24040 5.29572 5.31737 5.39692 5.45363 5.64711 5.67092 6.11401 6.45926 6.74650 6.89508 7.40375 8.90955 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023959 B = 0.010901 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.392705 B = 2568.024911 C = 3500.122239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.213 3.787 10 N -0.533 5.533 11 C 0.100 3.900 12 C -0.155 4.155 13 C -0.174 4.174 14 C -0.170 4.170 15 C 0.063 3.937 16 C -0.185 4.185 17 C -0.122 4.122 18 C -0.136 4.136 19 H 0.263 0.737 20 H -0.036 1.036 21 H 0.010 0.990 22 H 0.056 0.944 23 H 0.013 0.987 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -11.763 -1.861 13.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.087 3.913 10 N -0.255 5.255 11 C -0.028 4.028 12 C -0.173 4.173 13 C -0.211 4.211 14 C -0.207 4.207 15 C -0.046 4.046 16 C -0.224 4.224 17 C -0.159 4.159 18 C -0.174 4.174 19 H 0.072 0.928 20 H -0.018 1.018 21 H 0.028 0.972 22 H 0.074 0.926 23 H 0.031 0.969 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.570 -11.560 -1.474 12.917 hybrid contribution -0.676 1.192 -0.673 1.527 sum 4.894 -10.369 -2.148 11.665 Atomic orbital electron populations 1.70091 1.07610 1.27671 1.52026 1.25878 0.95734 1.03035 0.94977 0.85387 0.79006 0.78836 0.77730 1.18840 1.20406 1.20373 1.21569 0.93528 0.91480 1.49650 0.92296 1.19344 0.90206 0.88261 0.93535 1.61970 1.26693 1.02978 1.33902 1.21406 0.93423 0.98237 0.89750 1.22197 0.99388 0.99304 0.96436 1.23010 0.96447 1.02197 0.99447 1.23091 1.01732 0.93465 1.02423 1.23314 0.92114 0.92745 0.96447 1.23580 0.99884 1.00334 0.98605 1.22663 0.97940 1.00231 0.95115 1.23027 0.97436 1.00050 0.96852 0.92793 1.01823 0.97206 0.92589 0.96864 0.87748 0.87186 0.89316 0.89386 0.87106 0.86760 0.92682 0.91271 0.87543 0.91862 0.89908 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.52 -30.47 8.37 25.60 0.21 -30.26 16 8 H 0.06 3.40 7.18 -2.91 -0.02 3.38 16 9 C 0.21 11.53 3.38 85.56 0.29 11.82 16 10 N -0.53 -23.61 4.62 -872.44 -4.03 -27.64 16 11 C 0.10 4.00 5.09 86.30 0.44 4.44 16 12 C -0.15 -4.75 4.76 -10.79 -0.05 -4.80 16 13 C -0.17 -4.32 10.25 30.60 0.31 -4.01 16 14 C -0.17 -4.07 10.06 30.60 0.31 -3.76 16 15 C 0.06 2.27 3.67 45.44 0.17 2.44 16 16 C -0.18 -6.60 7.34 31.12 0.23 -6.38 16 17 C -0.12 -3.58 8.08 31.12 0.25 -3.33 16 18 C -0.14 -4.65 7.57 31.12 0.24 -4.42 16 19 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 20 H -0.04 -2.12 6.67 -2.39 -0.02 -2.13 16 21 H 0.01 0.58 6.08 -2.39 -0.01 0.57 16 22 H 0.06 2.54 6.65 -2.39 -0.02 2.52 16 23 H 0.01 0.54 7.85 -2.39 -0.02 0.52 16 24 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 25 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.11 3.57 7.05 -2.39 -0.02 3.55 16 30 H 0.05 2.43 5.69 -2.39 -0.01 2.42 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 2.30 6.31 -2.38 -0.02 2.28 16 Total: -1.00 -63.96 277.75 2.18 -61.78 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.04 Total: 13.08 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 2.86 Total: -37.70 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.74 Total: -84.43 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -63.96 2.18 -61.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308368048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.445 kcal (2) G-P(sol) polarization free energy of solvation -63.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds