Wall clock time and date at job start Sun Mar 29 2020 22:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47231 * 2 1 4 4 C 1.46902 * 110.99881 * 296.92585 * 3 2 1 5 5 C 1.50697 * 109.47096 * 288.58148 * 4 3 2 6 6 H 1.08010 * 119.99955 * 1.06921 * 5 4 3 7 7 C 1.37877 * 120.00372 * 181.07181 * 5 4 3 8 8 N 1.31509 * 120.00644 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99681 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46673 * 90.00416 * 9 7 5 11 11 H 1.48499 * 109.47755 * 210.00259 * 9 7 5 12 12 H 1.48501 * 109.47498 * 330.01131 * 9 7 5 13 13 C 1.46900 * 111.00024 * 60.88173 * 3 2 1 14 14 C 1.50692 * 109.47301 * 66.04540 * 13 3 2 15 15 C 1.39870 * 125.89990 * 95.00249 * 14 13 3 16 16 C 1.35320 * 107.92019 * 179.75902 * 15 14 13 17 17 N 1.34949 * 107.74494 * 0.41749 * 16 15 14 18 18 H 0.97000 * 126.03667 * 179.83966 * 17 16 15 19 19 N 1.30837 * 125.90125 * 275.02326 * 14 13 3 20 20 H 1.08999 * 109.46588 * 59.25622 * 1 2 3 21 21 H 1.08997 * 109.47343 * 179.25334 * 1 2 3 22 22 H 1.08998 * 109.47036 * 299.26073 * 1 2 3 23 23 H 1.08999 * 109.47354 * 239.99658 * 2 1 3 24 24 H 1.09000 * 109.46388 * 119.99983 * 2 1 3 25 25 H 1.08997 * 109.47086 * 48.58492 * 4 3 2 26 26 H 1.08998 * 109.46691 * 168.58639 * 4 3 2 27 27 H 0.96995 * 120.00659 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.47107 * 306.04054 * 13 3 2 29 29 H 1.09004 * 109.46986 * 186.04709 * 13 3 2 30 30 H 1.07997 * 126.03760 * 0.02562 * 15 14 13 31 31 H 1.08003 * 126.12449 * 180.26365 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6097 2.0883 -1.2228 5 6 2.3913 1.5545 -2.3954 6 1 3.1075 0.7592 -2.2500 7 6 2.1924 2.0814 -3.6539 8 7 2.8742 1.6153 -4.6773 9 14 0.9534 3.4565 -3.9055 10 1 1.6282 4.7682 -3.7341 11 1 0.3857 3.3671 -5.2748 12 1 -0.1387 3.3277 -2.9074 13 6 1.5660 2.1037 1.1981 14 6 2.2059 1.4973 2.4202 15 6 3.3750 1.9470 3.0425 16 6 3.6160 1.1447 4.1053 17 7 2.6393 0.2145 4.1483 18 1 2.5558 -0.4954 4.8040 19 7 1.7641 0.4588 3.0822 20 1 -0.3632 0.5254 -0.8833 21 1 -0.3634 -1.0275 -0.0134 22 1 -0.3633 0.5023 0.8965 23 1 1.8934 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 0.5449 1.9297 -1.3934 26 1 1.8049 3.1548 -1.1112 27 1 2.7340 1.9857 -5.5627 28 1 0.4817 2.0265 1.2794 29 1 1.8507 3.1532 1.1218 30 1 3.9765 2.7886 2.7324 31 1 4.4433 1.2317 4.7941 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308368936.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:19 Heat of formation + Delta-G solvation = 84.653957 kcal Electronic energy + Delta-G solvation = -13735.541299 eV Core-core repulsion = 11440.096290 eV Total energy + Delta-G solvation = -2295.445008 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.91765 -37.23954 -32.63649 -31.68708 -29.84415 -29.46456 -27.86376 -25.02062 -22.75909 -21.27167 -20.02860 -18.70987 -17.87792 -16.65524 -15.21790 -14.92523 -14.35670 -14.01651 -13.70935 -13.29630 -12.89587 -12.65945 -12.36666 -11.80187 -11.51901 -11.34620 -10.95864 -10.54731 -10.48425 -10.30450 -9.91118 -9.85241 -9.25373 -9.17300 -8.51401 -8.49210 -7.23160 -5.98867 -3.95059 2.08079 3.02018 3.07318 3.32472 3.39983 3.41739 4.47147 4.88283 4.99298 5.14860 5.34223 5.48034 5.84288 5.91586 5.99011 6.03732 6.12605 6.20687 6.27454 6.55089 6.57822 6.83875 6.91611 7.01233 7.15496 7.44131 7.67608 7.90910 7.98842 8.12754 8.73576 9.11479 9.63051 11.14571 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049593 B = 0.007807 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.460597 B = 3585.541933 C = 3686.719611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.060 3.940 3 N -0.518 5.518 4 C 0.158 3.842 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.122 3.878 14 C 0.101 3.899 15 C -0.253 4.253 16 C 0.045 3.955 17 N -0.486 5.486 18 H 0.434 0.566 19 N -0.293 5.293 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.061 0.939 25 H -0.002 1.002 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -0.061 16.166 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.069 4.069 3 N -0.242 5.242 4 C 0.032 3.968 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.008 4.008 14 C -0.067 4.067 15 C -0.283 4.283 16 C -0.102 4.102 17 N -0.194 5.194 18 H 0.277 0.723 19 N -0.117 5.117 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.080 0.920 25 H 0.016 0.984 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.914 -0.908 16.036 16.175 hybrid contribution -0.747 1.004 0.070 1.253 sum -2.661 0.096 16.107 16.325 Atomic orbital electron populations 1.22351 0.99460 1.01217 1.01432 1.22009 0.92037 0.90805 1.02017 1.62158 1.58983 1.02050 1.00994 1.20260 0.94863 0.93898 0.87785 1.21022 1.22592 1.20605 0.89885 0.90209 1.24884 0.95849 0.96705 0.95951 1.69890 1.41640 1.42848 0.99811 0.86895 0.82369 0.83147 0.77553 1.20174 1.21300 1.19226 1.20532 0.96536 0.97367 0.86409 1.22348 0.94845 0.93269 0.96207 1.21461 1.01286 1.06189 0.99317 1.22491 0.95002 0.92148 1.00522 1.46321 1.20800 1.26741 1.25564 0.72337 1.77311 1.15653 1.18810 0.99938 0.92074 0.93233 0.93271 0.90018 0.92031 0.98403 0.95925 0.92754 0.93771 0.89531 0.83572 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.27 37.16 0.34 -3.11 16 2 C 0.06 1.23 5.72 -3.82 -0.02 1.21 16 3 N -0.52 -11.24 4.65 -237.52 -1.10 -12.34 16 4 C 0.16 3.85 3.66 -4.98 -0.02 3.83 16 5 C -0.50 -14.44 9.11 -34.44 -0.31 -14.75 16 6 H 0.08 2.52 7.69 -52.48 -0.40 2.11 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.87 21.56 27.45 -169.99 -4.67 16.90 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.35 6.57 56.52 0.37 -5.97 16 13 C 0.12 2.21 5.29 -4.98 -0.03 2.19 16 14 C 0.10 1.70 5.97 -82.41 -0.49 1.21 16 15 C -0.25 -3.65 10.74 -40.01 -0.43 -4.08 16 16 C 0.05 0.51 11.99 -17.22 -0.21 0.31 16 17 N -0.49 -5.92 7.36 30.45 0.22 -5.69 16 18 H 0.43 3.65 8.96 -182.61 -1.64 2.01 16 19 N -0.29 -4.77 11.64 33.67 0.39 -4.38 16 20 H 0.06 1.22 6.22 -51.93 -0.32 0.90 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.86 6.33 -51.93 -0.33 0.54 16 23 H 0.08 1.86 7.15 -51.93 -0.37 1.49 16 24 H 0.06 1.23 6.48 -51.93 -0.34 0.89 16 25 H 0.00 -0.04 5.02 -51.93 -0.26 -0.30 16 26 H 0.02 0.54 7.19 -51.93 -0.37 0.17 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 28 H 0.04 0.79 6.04 -51.93 -0.31 0.48 16 29 H 0.09 1.47 7.87 -51.93 -0.41 1.06 16 30 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 254.59 15.07 3.84 3.84 Total: -1.00 -32.78 254.59 -7.00 -39.78 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.19 Total: 0.38 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.26 Total: -11.33 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.28 Total: -49.56 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.78 -7.00 -39.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308368936.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.432 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds