Wall clock time and date at job start Sun Mar 29 2020 22:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47231 * 2 1 4 4 C 1.46902 * 110.99881 * 296.92585 * 3 2 1 5 5 C 1.50697 * 109.47096 * 288.58148 * 4 3 2 6 6 H 1.08010 * 119.99955 * 1.06921 * 5 4 3 7 7 C 1.37877 * 120.00372 * 181.07181 * 5 4 3 8 8 N 1.31509 * 120.00644 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99681 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46673 * 90.00416 * 9 7 5 11 11 H 1.48499 * 109.47755 * 210.00259 * 9 7 5 12 12 H 1.48501 * 109.47498 * 330.01131 * 9 7 5 13 13 C 1.46900 * 111.00024 * 60.88173 * 3 2 1 14 14 C 1.50692 * 109.47301 * 66.04540 * 13 3 2 15 15 C 1.39870 * 125.89990 * 95.00249 * 14 13 3 16 16 C 1.35320 * 107.92019 * 179.75902 * 15 14 13 17 17 N 1.34949 * 107.74494 * 0.41749 * 16 15 14 18 18 H 0.97000 * 126.03667 * 179.83966 * 17 16 15 19 19 N 1.30837 * 125.90125 * 275.02326 * 14 13 3 20 20 H 1.08999 * 109.46588 * 59.25622 * 1 2 3 21 21 H 1.08997 * 109.47343 * 179.25334 * 1 2 3 22 22 H 1.08998 * 109.47036 * 299.26073 * 1 2 3 23 23 H 1.08999 * 109.47354 * 239.99658 * 2 1 3 24 24 H 1.09000 * 109.46388 * 119.99983 * 2 1 3 25 25 H 1.08997 * 109.47086 * 48.58492 * 4 3 2 26 26 H 1.08998 * 109.46691 * 168.58639 * 4 3 2 27 27 H 0.96995 * 120.00659 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.47107 * 306.04054 * 13 3 2 29 29 H 1.09004 * 109.46986 * 186.04709 * 13 3 2 30 30 H 1.07997 * 126.03760 * 0.02562 * 15 14 13 31 31 H 1.08003 * 126.12449 * 180.26365 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6097 2.0883 -1.2228 5 6 2.3913 1.5545 -2.3954 6 1 3.1075 0.7592 -2.2500 7 6 2.1924 2.0814 -3.6539 8 7 2.8742 1.6153 -4.6773 9 14 0.9534 3.4565 -3.9055 10 1 1.6282 4.7682 -3.7341 11 1 0.3857 3.3671 -5.2748 12 1 -0.1387 3.3277 -2.9074 13 6 1.5660 2.1037 1.1981 14 6 2.2059 1.4973 2.4202 15 6 3.3750 1.9470 3.0425 16 6 3.6160 1.1447 4.1053 17 7 2.6393 0.2145 4.1483 18 1 2.5558 -0.4954 4.8040 19 7 1.7641 0.4588 3.0822 20 1 -0.3632 0.5254 -0.8833 21 1 -0.3634 -1.0275 -0.0134 22 1 -0.3633 0.5023 0.8965 23 1 1.8934 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 0.5449 1.9297 -1.3934 26 1 1.8049 3.1548 -1.1112 27 1 2.7340 1.9857 -5.5627 28 1 0.4817 2.0265 1.2794 29 1 1.8507 3.1532 1.1218 30 1 3.9765 2.7886 2.7324 31 1 4.4433 1.2317 4.7941 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308368936.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:19 Heat of formation + Delta-G solvation = 59.767426 kcal Electronic energy + Delta-G solvation = -13736.620460 eV Core-core repulsion = 11440.096290 eV Total energy + Delta-G solvation = -2296.524169 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.99210 -38.88882 -34.74329 -32.99982 -31.36799 -30.70948 -29.59315 -26.61150 -24.64085 -22.33225 -21.60876 -20.07968 -18.91095 -18.80053 -16.78694 -16.68284 -16.11736 -15.34169 -15.10401 -14.56893 -14.43297 -14.27995 -13.93790 -13.32918 -13.27773 -12.86068 -12.65764 -12.37810 -12.19882 -11.86947 -11.55644 -11.52025 -11.40148 -10.72959 -10.32982 -9.54162 -8.91848 -8.23602 -6.26143 1.05039 1.38512 1.40115 1.50845 1.87899 2.15000 2.38638 3.09775 3.44281 3.86648 4.00830 4.26468 4.36327 4.49008 4.55001 4.63531 4.77548 4.87533 4.96626 5.00211 5.11133 5.19265 5.23491 5.42833 5.59071 5.74030 6.03786 6.38476 6.60290 6.69185 6.79248 6.84162 7.36647 8.93534 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049593 B = 0.007807 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.460597 B = 3585.541933 C = 3686.719611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.066 3.934 3 N -0.535 5.535 4 C 0.169 3.831 5 C -0.511 4.511 6 H 0.032 0.968 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.947 3.053 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.124 3.876 14 C 0.077 3.923 15 C -0.285 4.285 16 C 0.074 3.926 17 N -0.473 5.473 18 H 0.451 0.549 19 N -0.325 5.325 20 H 0.045 0.955 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.002 0.998 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 0.932 18.348 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.062 4.062 3 N -0.259 5.259 4 C 0.042 3.958 5 C -0.549 4.549 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.172 1.172 13 C -0.005 4.005 14 C -0.089 4.089 15 C -0.315 4.315 16 C -0.074 4.074 17 N -0.183 5.183 18 H 0.297 0.703 19 N -0.150 5.150 20 H 0.064 0.936 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.020 0.980 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.170 0.830 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.689 0.066 18.255 18.452 hybrid contribution -0.388 0.574 -0.492 0.850 sum -3.077 0.640 17.763 18.039 Atomic orbital electron populations 1.22225 0.97587 1.02344 1.01166 1.21865 0.93518 0.90268 1.00572 1.62010 1.59938 1.02512 1.01433 1.20016 0.94063 0.94220 0.87526 1.21235 1.22105 1.19514 0.92067 0.94997 1.25842 0.98114 0.99693 0.95374 1.70055 1.43821 1.44858 1.00526 0.85718 0.79860 0.79512 0.77898 1.18769 1.20954 1.17200 1.20505 0.96892 0.97589 0.85502 1.22212 0.96166 0.94257 0.96309 1.21716 1.01234 1.07724 1.00809 1.23164 0.94867 0.89846 0.99560 1.46367 1.20106 1.27098 1.24744 0.70293 1.77195 1.17325 1.19055 1.01429 0.93630 0.91455 0.92005 0.93471 0.91311 0.98044 0.94974 0.92518 0.93429 0.88607 0.83011 0.76200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.34 9.27 71.98 0.67 -5.68 16 2 C 0.07 2.76 5.72 86.30 0.49 3.25 16 3 N -0.53 -23.29 4.65 -905.38 -4.21 -27.50 16 4 C 0.17 8.19 3.66 85.56 0.31 8.51 16 5 C -0.51 -30.25 9.11 25.60 0.23 -30.01 16 6 H 0.03 2.13 7.69 -2.91 -0.02 2.11 16 7 C 0.01 0.38 5.47 84.66 0.46 0.84 16 8 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 9 Si 0.95 44.28 27.45 68.60 1.88 46.17 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.25 -10.77 6.57 99.48 0.65 -10.12 16 13 C 0.12 4.41 5.29 85.55 0.45 4.86 16 14 C 0.08 2.49 5.97 43.10 0.26 2.75 16 15 C -0.29 -7.65 10.74 21.99 0.24 -7.42 16 16 C 0.07 1.40 11.99 83.54 1.00 2.41 16 17 N -0.47 -10.10 7.36 -57.58 -0.42 -10.52 16 18 H 0.45 6.09 8.96 -213.33 -1.91 4.18 16 19 N -0.32 -10.01 11.64 -47.39 -0.55 -10.56 16 20 H 0.04 1.78 6.22 -2.39 -0.01 1.77 16 21 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.06 2.08 6.33 -2.39 -0.02 2.07 16 23 H 0.05 2.25 7.15 -2.39 -0.02 2.23 16 24 H 0.07 2.75 6.48 -2.39 -0.02 2.74 16 25 H 0.00 0.10 5.02 -2.39 -0.01 0.08 16 26 H 0.03 1.50 7.19 -2.39 -0.02 1.49 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.05 1.63 6.04 -2.38 -0.01 1.62 16 29 H 0.10 3.13 7.87 -2.38 -0.02 3.11 16 30 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -72.81 254.59 0.29 -72.52 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -0.83 Total: 10.63 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.12 Total: -20.49 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -4.89 Total: -108.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.17 kcal Total: -72.81 0.29 -72.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308368936.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.289 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds