Wall clock time and date at job start Sun Mar 29 2020 21:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39875 * 125.89547 * 2 1 4 4 C 1.35316 * 107.91722 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.12628 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47252 * 94.99787 * 5 4 3 7 7 C 1.46907 * 111.00011 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47061 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.46745 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00497 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99495 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00355 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99555 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47374 * 60.00322 * 13 11 9 15 15 H 1.48507 * 109.46757 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47338 * 299.99809 * 13 11 9 17 17 N 1.34946 * 107.74870 * 0.02562 * 4 3 2 18 18 H 0.96996 * 126.03950 * 180.02562 * 17 4 3 19 19 N 1.30829 * 125.90154 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46946 * 90.00105 * 1 2 3 21 21 H 1.09003 * 109.47429 * 209.99905 * 1 2 3 22 22 H 1.09000 * 109.47862 * 330.00238 * 1 2 3 23 23 H 1.07999 * 126.04264 * 359.71604 * 3 2 1 24 24 H 1.09004 * 109.47041 * 215.00273 * 5 4 3 25 25 H 1.09006 * 109.46948 * 335.00001 * 5 4 3 26 26 H 1.00901 * 110.99826 * 56.04841 * 6 5 4 27 27 H 1.08994 * 109.46858 * 300.00431 * 7 6 5 28 28 H 1.09000 * 109.46920 * 60.00391 * 7 6 5 29 29 H 1.08998 * 109.46614 * 300.00113 * 8 7 6 30 30 H 1.08993 * 109.47139 * 59.99905 * 8 7 6 31 31 H 0.96999 * 119.99913 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 0.0006 5 6 4.8350 1.5990 0.0002 6 7 5.3021 1.7893 1.3799 7 6 6.4934 2.6481 1.4186 8 6 6.9496 2.8222 2.8686 9 6 8.1712 3.7036 2.9084 10 1 8.5810 4.1004 1.9913 11 6 8.7652 4.0045 4.1158 12 7 8.2660 3.5218 5.2326 13 14 10.2792 5.0977 4.1651 14 1 9.9502 6.4252 3.5865 15 1 10.7221 5.2666 5.5725 16 1 11.3691 4.4699 3.3756 17 7 3.6087 -0.6340 0.0004 18 1 4.3908 -1.2078 0.0010 19 7 2.2741 -1.0598 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3635 0.8900 0.5138 23 1 1.9922 2.1599 -0.0043 24 1 5.6230 1.1297 -0.5888 25 1 4.5833 2.5663 -0.4348 26 1 5.4806 0.9025 1.8268 27 1 7.2930 2.1865 0.8394 28 1 6.2527 3.6226 0.9936 29 1 6.1500 3.2836 3.4481 30 1 7.1903 1.8477 3.2933 31 1 8.6841 3.7332 6.0820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308374276.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:16 Heat of formation + Delta-G solvation = 55.585690 kcal Electronic energy + Delta-G solvation = -12856.887375 eV Core-core repulsion = 10560.181872 eV Total energy + Delta-G solvation = -2296.705503 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.16255 -36.18106 -33.34204 -32.62643 -30.88364 -28.86177 -27.85414 -25.48253 -23.32676 -20.81601 -20.32164 -19.82294 -17.28524 -16.35756 -15.48911 -14.97772 -14.49781 -14.02066 -13.78076 -13.56236 -13.06737 -12.76373 -12.66599 -12.32367 -12.16430 -11.72420 -11.13878 -10.94671 -10.60040 -10.52759 -10.07007 -9.52017 -9.29375 -9.17004 -8.55290 -8.38626 -7.98168 -6.02795 -4.06168 1.89842 2.81094 2.89771 3.31444 3.36146 3.38144 4.40168 4.58333 4.75369 4.86143 5.15144 5.30583 5.33118 5.53392 5.62994 5.69419 5.80192 5.91284 6.21369 6.22367 6.31836 6.72275 6.88048 7.26322 7.35832 7.62969 7.70894 7.73739 7.84184 8.02280 8.37880 9.00777 9.57894 11.08543 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.079287 B = 0.004660 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.060647 B = 6006.908912 C = 6079.996883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.071 3.929 3 C -0.255 4.255 4 C 0.102 3.898 5 C 0.117 3.883 6 N -0.684 5.684 7 C 0.065 3.935 8 C 0.025 3.975 9 C -0.525 4.525 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 N -0.476 5.476 18 H 0.435 0.565 19 N -0.300 5.300 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.147 0.853 24 H 0.037 0.963 25 H 0.097 0.903 26 H 0.336 0.664 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 -5.578 -10.944 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C -0.285 4.285 4 C -0.027 4.027 5 C -0.014 4.014 6 N -0.315 5.315 7 C -0.062 4.062 8 C -0.012 4.012 9 C -0.563 4.563 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 N -0.185 5.185 18 H 0.279 0.721 19 N -0.125 5.125 20 H 0.093 0.907 21 H 0.089 0.911 22 H 0.096 0.904 23 H 0.165 0.835 24 H 0.055 0.945 25 H 0.115 0.885 26 H 0.154 0.846 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.862 -6.301 -10.625 16.449 hybrid contribution 2.035 0.562 -0.176 2.118 sum -8.827 -5.739 -10.800 15.083 Atomic orbital electron populations 1.20158 0.86861 1.03294 1.02698 1.22322 0.96945 0.90855 0.99423 1.21130 0.90856 0.99838 1.16682 1.21142 0.97414 0.84421 0.99687 1.20572 0.90785 0.97725 0.92297 1.60625 1.37474 1.19744 1.13704 1.22230 0.87290 0.95163 1.01546 1.19069 0.96069 0.97038 0.89057 1.21117 1.11886 1.30586 0.92753 0.92730 1.25006 0.97466 0.96145 0.95680 1.69961 1.40605 1.44818 0.97775 0.86633 0.83119 0.81107 0.76976 1.20155 1.21237 1.20294 1.46245 1.07158 1.05094 1.59964 0.72127 1.77213 0.86587 1.22613 1.26060 0.90740 0.91094 0.90352 0.83516 0.94501 0.88489 0.84648 0.96397 0.91857 0.95487 0.96834 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 36.00 0.38 -0.29 16 2 C 0.07 0.95 7.22 -82.41 -0.59 0.35 16 3 C -0.26 -3.49 10.65 -40.01 -0.43 -3.92 16 4 C 0.10 1.41 6.72 -82.26 -0.55 0.85 16 5 C 0.12 1.61 6.23 -4.98 -0.03 1.58 16 6 N -0.68 -11.81 6.49 -115.05 -0.75 -12.55 16 7 C 0.07 1.32 5.62 -3.82 -0.02 1.30 16 8 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 9 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 N -0.48 -6.29 7.36 33.48 0.25 -6.04 16 18 H 0.44 4.60 8.96 -182.61 -1.64 2.97 16 19 N -0.30 -4.39 12.70 33.67 0.43 -3.96 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.34 5.70 8.72 -39.29 -0.34 5.36 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 272.45 15.07 4.11 4.11 Total: -1.00 -31.69 272.45 -7.81 -39.50 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.75 Total: 1.68 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.81 Total: -13.08 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.66 Total: -48.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.69 -7.81 -39.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308374276.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.081 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds