Wall clock time and date at job start Sun Mar 29 2020 21:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39875 * 125.89547 * 2 1 4 4 C 1.35316 * 107.91722 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.12628 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47252 * 94.99787 * 5 4 3 7 7 C 1.46907 * 111.00011 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47061 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.46745 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00497 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99495 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00355 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99555 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47374 * 60.00322 * 13 11 9 15 15 H 1.48507 * 109.46757 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47338 * 299.99809 * 13 11 9 17 17 N 1.34946 * 107.74870 * 0.02562 * 4 3 2 18 18 H 0.96996 * 126.03950 * 180.02562 * 17 4 3 19 19 N 1.30829 * 125.90154 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46946 * 90.00105 * 1 2 3 21 21 H 1.09003 * 109.47429 * 209.99905 * 1 2 3 22 22 H 1.09000 * 109.47862 * 330.00238 * 1 2 3 23 23 H 1.07999 * 126.04264 * 359.71604 * 3 2 1 24 24 H 1.09004 * 109.47041 * 215.00273 * 5 4 3 25 25 H 1.09006 * 109.46948 * 335.00001 * 5 4 3 26 26 H 1.00901 * 110.99826 * 56.04841 * 6 5 4 27 27 H 1.08994 * 109.46858 * 300.00431 * 7 6 5 28 28 H 1.09000 * 109.46920 * 60.00391 * 7 6 5 29 29 H 1.08998 * 109.46614 * 300.00113 * 8 7 6 30 30 H 1.08993 * 109.47139 * 59.99905 * 8 7 6 31 31 H 0.96999 * 119.99913 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 0.0006 5 6 4.8350 1.5990 0.0002 6 7 5.3021 1.7893 1.3799 7 6 6.4934 2.6481 1.4186 8 6 6.9496 2.8222 2.8686 9 6 8.1712 3.7036 2.9084 10 1 8.5810 4.1004 1.9913 11 6 8.7652 4.0045 4.1158 12 7 8.2660 3.5218 5.2326 13 14 10.2792 5.0977 4.1651 14 1 9.9502 6.4252 3.5865 15 1 10.7221 5.2666 5.5725 16 1 11.3691 4.4699 3.3756 17 7 3.6087 -0.6340 0.0004 18 1 4.3908 -1.2078 0.0010 19 7 2.2741 -1.0598 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3635 0.8900 0.5138 23 1 1.9922 2.1599 -0.0043 24 1 5.6230 1.1297 -0.5888 25 1 4.5833 2.5663 -0.4348 26 1 5.4806 0.9025 1.8268 27 1 7.2930 2.1865 0.8394 28 1 6.2527 3.6226 0.9936 29 1 6.1500 3.2836 3.4481 30 1 7.1903 1.8477 3.2933 31 1 8.6841 3.7332 6.0820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308374276.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:15 Heat of formation + Delta-G solvation = 32.723876 kcal Electronic energy + Delta-G solvation = -12857.878738 eV Core-core repulsion = 10560.181872 eV Total energy + Delta-G solvation = -2297.696866 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.18573 -37.63780 -35.18097 -33.82478 -32.31953 -30.41360 -28.73322 -27.06951 -24.98434 -22.51775 -21.48470 -20.79368 -18.57045 -18.30250 -16.87656 -16.44846 -16.13363 -15.25210 -15.10882 -14.64993 -14.37102 -14.14142 -13.71678 -13.56356 -13.49739 -13.02158 -12.87534 -12.72812 -12.43357 -11.95702 -11.53643 -11.43731 -11.31938 -10.55958 -10.27433 -9.62370 -9.35076 -8.20046 -6.31915 0.84204 1.41753 1.44790 1.52716 1.79271 1.93912 2.41357 3.13815 3.36626 3.68021 3.82689 4.12351 4.39089 4.51252 4.59034 4.64667 4.77483 4.85902 4.92486 5.05914 5.12767 5.29238 5.43662 5.64893 5.75379 5.77411 6.06280 6.20285 6.37404 6.40088 6.72480 6.85800 7.37831 8.91966 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.079287 B = 0.004660 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.060647 B = 6006.908912 C = 6079.996883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.064 3.936 3 C -0.269 4.269 4 C 0.096 3.904 5 C 0.124 3.876 6 N -0.693 5.693 7 C 0.085 3.915 8 C 0.029 3.971 9 C -0.545 4.545 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.967 3.033 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.475 5.475 18 H 0.444 0.556 19 N -0.327 5.327 20 H 0.091 0.909 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.159 0.841 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.336 0.664 27 H 0.028 0.972 28 H 0.068 0.932 29 H -0.007 1.007 30 H -0.011 1.011 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 -4.993 -12.233 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C -0.299 4.299 4 C -0.033 4.033 5 C -0.007 4.007 6 N -0.325 5.325 7 C -0.044 4.044 8 C -0.008 4.008 9 C -0.584 4.584 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.191 1.191 17 N -0.185 5.185 18 H 0.289 0.711 19 N -0.152 5.152 20 H 0.110 0.890 21 H 0.092 0.908 22 H 0.111 0.889 23 H 0.177 0.823 24 H 0.074 0.926 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.012 0.988 30 H 0.008 0.992 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.696 -5.730 -11.940 17.023 hybrid contribution 1.915 0.340 0.221 1.957 sum -8.781 -5.390 -11.719 15.604 Atomic orbital electron populations 1.20305 0.84374 1.04169 1.04083 1.22941 0.98660 0.90323 0.98280 1.21454 0.91054 1.00691 1.16672 1.21169 0.97494 0.84648 1.00035 1.20571 0.91203 0.98605 0.90290 1.60496 1.35987 1.19631 1.16346 1.21829 0.88678 0.96261 0.97615 1.18936 0.94643 0.95036 0.92214 1.21601 1.12631 1.30820 0.93302 0.91726 1.25993 1.00914 0.97640 0.95247 1.70108 1.42384 1.46373 0.98472 0.85469 0.78980 0.79259 0.77132 1.19017 1.21040 1.19068 1.46290 1.07292 1.05143 1.59752 0.71119 1.77182 0.87228 1.23616 1.27179 0.89011 0.90795 0.88890 0.82338 0.92588 0.87441 0.84645 0.95419 0.91375 0.98820 0.99233 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.45 71.23 0.74 -0.44 16 2 C 0.06 1.62 7.22 43.10 0.31 1.93 16 3 C -0.27 -6.96 10.65 21.99 0.23 -6.73 16 4 C 0.10 2.50 6.72 41.41 0.28 2.78 16 5 C 0.12 3.15 6.23 85.56 0.53 3.69 16 6 N -0.69 -23.31 6.49 -517.91 -3.36 -26.67 16 7 C 0.08 3.35 5.62 86.30 0.49 3.83 16 8 C 0.03 1.53 5.23 29.85 0.16 1.69 16 9 C -0.55 -30.58 9.11 25.60 0.23 -30.35 16 10 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 11 C 0.00 0.00 5.46 84.66 0.46 0.46 16 12 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 13 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 17 N -0.48 -12.08 7.36 -48.00 -0.35 -12.44 16 18 H 0.44 9.01 8.96 -213.33 -1.91 7.10 16 19 N -0.33 -9.27 12.70 -47.39 -0.60 -9.87 16 20 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 24 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.34 11.29 8.72 -89.69 -0.78 10.51 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -67.50 272.45 -0.13 -67.63 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -1.57 Total: 15.46 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 3.44 Total: -23.13 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.03 Total: -105.67 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.50 -0.13 -67.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308374276.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.357 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds