Wall clock time and date at job start Sun Mar 29 2020 21:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99697 * 2 1 4 4 H 1.48501 * 109.47364 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47246 * 120.00416 * 3 2 1 6 6 H 1.48503 * 109.46953 * 240.00076 * 3 2 1 7 7 C 1.38945 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99934 * 198.20410 * 7 2 1 9 9 N 1.37098 * 120.00124 * 18.20676 * 7 2 1 10 10 C 1.34775 * 119.99644 * 44.28919 * 9 7 2 11 11 O 1.21294 * 120.00564 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99755 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47162 * 179.97438 * 12 10 9 14 14 C 1.53001 * 117.49965 * 243.62039 * 13 12 10 15 15 C 1.53000 * 60.00241 * 252.51280 * 14 13 12 16 16 C 1.46495 * 119.99845 * 224.28762 * 9 7 2 17 17 C 1.52995 * 117.50374 * 3.22617 * 16 9 7 18 18 C 1.52992 * 117.50096 * 294.60129 * 16 9 7 19 19 H 0.96998 * 120.00008 * 354.92536 * 1 2 3 20 20 H 1.09003 * 109.47107 * 300.00212 * 12 10 9 21 21 H 1.09005 * 109.47284 * 59.99877 * 12 10 9 22 22 H 1.09003 * 115.55139 * 29.33352 * 13 12 10 23 23 H 1.08994 * 117.50272 * 0.02562 * 14 13 12 24 24 H 1.09001 * 117.49318 * 145.02257 * 14 13 12 25 25 H 1.08998 * 117.49908 * 252.51535 * 15 14 13 26 26 H 1.08997 * 117.49820 * 107.49328 * 15 14 13 27 27 H 1.09011 * 115.54677 * 148.93476 * 16 9 7 28 28 H 1.09005 * 117.49473 * 0.02562 * 17 16 9 29 29 H 1.09004 * 117.50398 * 145.01482 * 17 16 9 30 30 H 1.09001 * 117.49789 * 214.97962 * 18 16 9 31 31 H 1.08993 * 117.50138 * 359.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1019 1.6965 1.2124 6 1 3.1018 1.6965 -1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0484 -1.2265 0.2927 9 7 1.3749 -2.3611 -0.3699 10 6 0.5784 -2.3750 -1.4570 11 8 0.4220 -1.3631 -2.1074 12 6 -0.1180 -3.6478 -1.8646 13 6 -0.9537 -3.3922 -3.1204 14 6 -2.4710 -3.5513 -3.0038 15 6 -1.6486 -4.5943 -3.7633 16 6 1.5634 -3.5830 0.4159 17 6 2.4185 -3.4848 1.6807 18 6 2.9643 -4.1973 0.4417 19 1 -0.4850 0.8367 0.0743 20 1 0.6249 -4.4179 -2.0725 21 1 -0.7696 -3.9803 -1.0564 22 1 -0.5786 -2.6134 -3.7843 23 1 -2.8738 -3.8377 -2.0323 24 1 -3.0943 -2.8769 -3.5910 25 1 -1.7309 -4.6060 -4.8501 26 1 -1.5104 -5.5671 -3.2915 27 1 0.7139 -4.2660 0.4340 28 1 2.8406 -2.5108 1.9285 29 1 2.1318 -4.1030 2.5315 30 1 3.0367 -5.2843 0.4773 31 1 3.7458 -3.6926 -0.1262 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308407797.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:37 Heat of formation + Delta-G solvation = 3.948971 kcal Electronic energy + Delta-G solvation = -14022.253904 eV Core-core repulsion = 11691.016514 eV Total energy + Delta-G solvation = -2331.237390 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46004 -38.31454 -37.34455 -34.74063 -32.88018 -30.27946 -26.69416 -23.23247 -23.16740 -22.83567 -22.07182 -20.51698 -18.36333 -17.82642 -16.72367 -16.43220 -15.95819 -15.64549 -15.13714 -14.63820 -14.35074 -13.75080 -13.42978 -12.88267 -12.80512 -12.63759 -12.31962 -12.20286 -12.18664 -12.07682 -11.64336 -11.19614 -11.17858 -10.77892 -10.67316 -9.90001 -8.94485 -8.19080 -5.97288 1.34094 1.43209 1.46462 2.26328 2.44320 2.95472 3.12383 3.17109 3.38628 3.89214 4.00027 4.13533 4.16643 4.28630 4.31501 4.50638 4.67270 4.80429 4.81567 4.91057 4.95110 5.02643 5.13255 5.30241 5.32297 5.44419 5.47227 5.50868 6.21851 7.06036 7.24708 7.73882 8.41324 8.89709 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.012570 C = 0.009209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.888228 B = 2226.931450 C = 3039.745652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.255 1.255 6 H -0.282 1.282 7 C -0.358 4.358 8 H 0.076 0.924 9 N -0.449 5.449 10 C 0.466 3.534 11 O -0.589 6.589 12 C -0.086 4.086 13 C -0.160 4.160 14 C -0.185 4.185 15 C -0.149 4.149 16 C 0.044 3.956 17 C -0.173 4.173 18 C -0.179 4.179 19 H 0.258 0.742 20 H 0.102 0.898 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 -11.057 -0.419 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.186 4.186 3 Si 0.794 3.206 4 H -0.213 1.213 5 H -0.179 1.179 6 H -0.208 1.208 7 C -0.486 4.486 8 H 0.093 0.907 9 N -0.170 5.170 10 C 0.256 3.744 11 O -0.471 6.471 12 C -0.126 4.126 13 C -0.179 4.179 14 C -0.222 4.222 15 C -0.186 4.186 16 C -0.061 4.061 17 C -0.210 4.210 18 C -0.218 4.218 19 H 0.067 0.933 20 H 0.121 0.879 21 H 0.105 0.895 22 H 0.097 0.903 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.144 0.856 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.127 -10.417 -0.797 10.448 hybrid contribution 0.252 1.403 0.094 1.428 sum 0.125 -9.014 -0.703 9.043 Atomic orbital electron populations 1.69939 1.07986 1.27540 1.45363 1.26069 0.95538 1.02628 0.94371 0.85391 0.78153 0.78250 0.78783 1.21309 1.17927 1.20833 1.19052 0.94655 0.85404 1.49460 0.90682 1.43057 1.44025 1.07784 1.22097 1.20855 0.82414 0.90387 0.80753 1.90452 1.64306 1.37271 1.55037 1.21050 0.99048 0.95515 0.96984 1.21921 0.94813 1.01768 0.99377 1.23032 0.93239 1.03397 1.02563 1.23079 1.01679 0.93749 1.00051 1.22017 0.95052 0.90556 0.98437 1.23112 1.03768 1.02069 0.92099 1.23319 0.96789 1.00528 1.01135 0.93275 0.87945 0.89513 0.90322 0.88630 0.89333 0.87615 0.86706 0.85597 0.90298 0.86405 0.85529 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.66 11.74 21.66 0.25 -54.40 16 2 C 0.02 1.16 4.39 84.92 0.37 1.54 16 3 Si 0.97 47.00 29.59 68.60 2.03 49.03 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.36 -20.31 7.92 84.04 0.67 -19.65 16 8 H 0.08 4.11 7.26 -2.91 -0.02 4.09 16 9 N -0.45 -23.06 2.83 -613.15 -1.74 -24.80 16 10 C 0.47 24.56 6.97 87.66 0.61 25.17 16 11 O -0.59 -36.86 13.32 -3.07 -0.04 -36.90 16 12 C -0.09 -3.31 4.60 29.85 0.14 -3.17 16 13 C -0.16 -5.88 5.41 -10.79 -0.06 -5.94 16 14 C -0.19 -5.76 10.18 30.59 0.31 -5.45 16 15 C -0.15 -3.82 10.25 30.60 0.31 -3.50 16 16 C 0.04 1.72 5.87 44.99 0.26 1.98 16 17 C -0.17 -5.95 9.80 30.59 0.30 -5.65 16 18 C -0.18 -5.64 10.36 30.59 0.32 -5.33 16 19 H 0.26 15.62 8.32 -92.71 -0.77 14.84 16 20 H 0.10 3.33 8.11 -2.39 -0.02 3.31 16 21 H 0.09 3.07 7.30 -2.38 -0.02 3.05 16 22 H 0.08 3.44 7.30 -2.39 -0.02 3.42 16 23 H 0.10 2.83 8.03 -2.39 -0.02 2.81 16 24 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.13 4.19 6.96 -2.38 -0.02 4.17 16 28 H 0.08 3.17 6.72 -2.38 -0.02 3.15 16 29 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -73.85 263.40 4.85 -69.01 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.11 Total: 18.06 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 3.23 Total: -20.00 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.48 Total: -79.20 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.04 Total: -36.90 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -73.85 4.85 -69.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308407797.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.957 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds