Wall clock time and date at job start Sun Mar 29 2020 21:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00310 * 2 1 4 4 N 1.46496 * 109.47106 * 234.99954 * 3 2 1 5 5 C 1.46502 * 120.00058 * 89.99968 * 4 3 2 6 6 C 1.50700 * 109.47259 * 89.99796 * 5 4 3 7 7 H 1.08001 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00002 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00061 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99903 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47134 * 89.99960 * 10 8 6 12 12 H 1.48502 * 109.47450 * 209.99546 * 10 8 6 13 13 H 1.48495 * 109.47412 * 330.00058 * 10 8 6 14 14 C 1.34779 * 120.00216 * 269.99787 * 4 3 2 15 15 O 1.21277 * 119.99995 * 180.02562 * 14 4 3 16 16 C 1.50703 * 119.99541 * 0.02562 * 14 4 3 17 17 C 1.52998 * 117.49591 * 248.74571 * 16 14 4 18 18 C 1.53003 * 117.49306 * 180.08985 * 16 14 4 19 19 H 1.08002 * 120.00332 * 179.97438 * 1 2 3 20 20 H 1.08008 * 119.99965 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.00179 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46953 * 354.99693 * 3 2 1 23 23 H 1.09000 * 109.47318 * 114.99290 * 3 2 1 24 24 H 1.09002 * 109.47278 * 209.99857 * 5 4 3 25 25 H 1.09000 * 109.47206 * 329.99759 * 5 4 3 26 26 H 0.96999 * 119.99696 * 180.02562 * 9 8 6 27 27 H 1.08999 * 115.55000 * 34.41835 * 16 14 4 28 28 H 1.09001 * 117.50058 * 0.02562 * 17 16 14 29 29 H 1.08999 * 117.49770 * 145.02264 * 17 16 14 30 30 H 1.09001 * 117.49003 * 214.97442 * 18 16 14 31 31 H 1.08993 * 117.50076 * 359.97299 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 -1.1314 5 6 2.5589 1.8649 -2.4248 6 6 2.8443 3.3436 -2.4804 7 1 3.3033 3.8370 -1.6365 8 6 2.5185 4.0667 -3.6082 9 7 1.9591 3.4659 -4.6357 10 14 2.8717 5.8997 -3.6768 11 1 4.2318 6.1214 -4.2302 12 1 1.8689 6.5649 -4.5470 13 1 2.7952 6.4701 -2.3079 14 6 4.2497 0.8661 -0.9824 15 8 5.0199 0.8887 -1.9189 16 6 4.6969 0.3173 0.3480 17 6 5.7383 1.1207 1.1296 18 6 6.1350 -0.1943 0.4538 19 1 -0.5401 -0.9353 -0.0004 20 1 -0.5400 0.9354 -0.0004 21 1 1.8499 -0.9353 -0.0004 22 1 1.3586 2.1317 -0.0896 23 1 2.6213 1.4027 0.9314 24 1 3.0990 1.3603 -3.2260 25 1 1.4888 1.6966 -2.5460 26 1 1.7303 3.9746 -5.4293 27 1 3.9325 -0.2077 0.9209 28 1 6.0997 2.0464 0.6817 29 1 5.6593 1.1239 2.2167 30 1 6.3166 -1.0555 1.0967 31 1 6.7574 -0.1342 -0.4389 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308421991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:41 Heat of formation + Delta-G solvation = 7.949971 kcal Electronic energy + Delta-G solvation = -13727.701137 eV Core-core repulsion = 11396.637243 eV Total energy + Delta-G solvation = -2331.063894 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.33153 -36.15007 -35.30555 -33.13672 -32.00721 -27.86601 -25.53145 -24.24039 -22.24108 -21.66959 -19.83734 -18.24851 -16.73560 -16.44464 -15.61324 -14.68472 -14.57710 -14.34758 -13.81260 -13.23509 -12.81338 -12.21770 -11.90357 -11.60740 -11.32586 -11.28210 -11.05169 -10.87531 -10.60871 -10.32466 -10.21367 -10.13435 -9.61260 -9.16151 -8.88013 -8.41457 -7.65016 -6.02279 -4.06998 2.47059 3.22782 3.32172 3.38132 3.40727 3.95313 4.27310 4.45966 4.98216 5.07943 5.15975 5.23380 5.31617 5.43897 5.51601 5.71629 5.75563 5.93945 6.04238 6.19215 6.23779 6.35481 6.81633 6.94181 7.12664 7.47632 7.59070 7.94474 8.25916 8.45851 8.92638 9.14008 9.57985 11.05824 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.025828 B = 0.010442 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.817582 B = 2680.823210 C = 3330.729491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.168 4.168 3 C 0.138 3.862 4 N -0.590 5.590 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.533 3.467 15 O -0.542 6.542 16 C -0.190 4.190 17 C -0.156 4.156 18 C -0.154 4.154 19 H 0.093 0.907 20 H 0.099 0.901 21 H 0.104 0.896 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.263 0.737 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -5.905 12.217 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C 0.014 3.986 4 N -0.321 5.321 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.320 3.680 15 O -0.420 6.420 16 C -0.212 4.212 17 C -0.194 4.194 18 C -0.191 4.191 19 H 0.112 0.888 20 H 0.117 0.883 21 H 0.122 0.878 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.779 -5.829 11.499 12.915 hybrid contribution -0.063 0.951 -0.092 0.957 sum 0.716 -4.878 11.407 12.427 Atomic orbital electron populations 1.23811 0.95846 1.01722 1.00805 1.23463 0.96401 0.99128 0.99697 1.20566 0.92981 0.95132 0.89955 1.48128 1.10413 1.60003 1.13513 1.19278 0.95387 0.93759 0.78812 1.21441 1.40421 0.93338 1.01243 0.92470 1.24939 0.95081 0.98762 0.95359 1.69939 1.42093 1.36166 1.05165 0.86503 0.78126 0.84892 0.77927 1.20564 1.21141 1.19922 1.19449 0.82283 0.78115 0.88156 1.90652 1.52851 1.56774 1.41699 1.22348 0.94166 1.06388 0.98279 1.22882 1.01427 0.96489 0.98592 1.22895 0.95952 0.97125 1.03145 0.88821 0.88296 0.87808 0.89579 0.90579 0.93946 0.94957 0.92744 0.86491 0.88286 0.88371 0.88564 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 14.32 29.02 0.42 -2.03 16 2 C -0.17 -2.46 9.54 -36.02 -0.34 -2.80 16 3 C 0.14 2.32 5.49 -5.19 -0.03 2.29 16 4 N -0.59 -12.93 2.44 -176.43 -0.43 -13.36 16 5 C 0.25 6.63 5.16 -5.19 -0.03 6.60 16 6 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 10 Si 0.90 22.12 29.54 -169.99 -5.02 17.09 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.53 11.58 7.45 -10.98 -0.08 11.50 16 15 O -0.54 -14.19 15.84 5.56 0.09 -14.10 16 16 C -0.19 -3.00 4.79 -91.77 -0.44 -3.44 16 17 C -0.16 -2.13 10.24 -26.69 -0.27 -2.40 16 18 C -0.15 -2.13 10.05 -26.69 -0.27 -2.40 16 19 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 20 H 0.10 1.29 7.84 -52.48 -0.41 0.88 16 21 H 0.10 1.44 8.03 -52.49 -0.42 1.02 16 22 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 23 H 0.08 1.09 6.64 -51.93 -0.35 0.75 16 24 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 25 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.12 1.54 6.97 -51.93 -0.36 1.18 16 28 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.11 1.67 7.67 -51.93 -0.40 1.28 16 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -32.92 273.27 -6.36 -39.27 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.38 Total: -0.26 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.47 Total: -6.52 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.31 Total: -39.60 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.92 -6.36 -39.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308421991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.222 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds