Wall clock time and date at job start Sun Mar 29 2020 21:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47286 * 2 1 4 4 H 1.08995 * 109.47210 * 175.06470 * 3 2 1 5 5 C 1.50698 * 109.46798 * 55.06397 * 3 2 1 6 6 H 1.08003 * 120.00036 * 245.69763 * 5 3 2 7 7 C 1.37882 * 120.00097 * 65.70409 * 5 3 2 8 8 N 1.31509 * 119.99984 * 5.48830 * 7 5 3 9 9 Si 1.86806 * 119.99868 * 185.49564 * 7 5 3 10 10 H 1.48504 * 109.46595 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.46903 * 299.99465 * 9 7 5 12 12 H 1.48501 * 109.47018 * 59.99766 * 9 7 5 13 13 N 1.46893 * 109.46898 * 295.06657 * 3 2 1 14 14 C 1.46900 * 111.00201 * 279.82602 * 13 3 2 15 15 C 1.50699 * 109.47367 * 185.02226 * 14 13 3 16 16 C 1.39870 * 126.03987 * 269.68911 * 15 14 13 17 17 N 1.30835 * 108.19822 * 179.81721 * 16 15 14 18 18 N 1.40085 * 108.20787 * 0.44451 * 17 16 15 19 19 H 0.97001 * 126.03737 * 179.69475 * 18 17 16 20 20 C 1.34943 * 107.92455 * 359.71332 * 18 17 16 21 21 H 1.09000 * 109.46833 * 65.00798 * 1 2 3 22 22 H 1.08998 * 109.47633 * 185.00669 * 1 2 3 23 23 H 1.09003 * 109.47251 * 305.01202 * 1 2 3 24 24 H 1.09000 * 109.47630 * 239.99572 * 2 1 3 25 25 H 1.09002 * 109.46791 * 119.99717 * 2 1 3 26 26 H 0.96998 * 120.00342 * 355.15517 * 8 7 5 27 27 H 1.00906 * 111.00326 * 43.77923 * 13 3 2 28 28 H 1.08998 * 109.47002 * 305.02877 * 14 13 3 29 29 H 1.09004 * 109.47087 * 65.01908 * 14 13 3 30 30 H 1.07999 * 125.89827 * 0.02562 * 16 15 14 31 31 H 1.08002 * 126.13085 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7568 3.0048 0.9888 7 6 1.7643 1.8251 2.4551 8 7 2.6773 0.9032 2.6698 9 14 0.9063 2.6439 3.8984 10 1 1.4297 2.0814 5.1692 11 1 1.1618 4.1062 3.8614 12 1 -0.5551 2.3943 3.8119 13 7 1.6500 2.0997 -1.2545 14 6 2.5595 1.7302 -2.3473 15 6 2.2046 2.5156 -3.5836 16 6 1.3028 2.1222 -4.5777 17 7 1.2575 3.0644 -5.4843 18 7 2.1380 4.0840 -5.1004 19 1 2.3091 4.9043 -5.5889 20 6 2.7066 3.7232 -3.9309 21 1 -0.3633 0.4342 -0.9315 22 1 -0.3634 -1.0237 0.0897 23 1 -0.3634 0.5896 0.8417 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 3.0721 0.4282 1.9219 27 1 0.6931 1.8858 -1.4926 28 1 3.5861 1.9538 -2.0569 29 1 2.4646 0.6642 -2.5543 30 1 0.7386 1.2014 -4.5925 31 1 3.4320 4.2958 -3.3721 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308437011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:15 Heat of formation + Delta-G solvation = 65.072241 kcal Electronic energy + Delta-G solvation = -13617.538691 eV Core-core repulsion = 11321.244556 eV Total energy + Delta-G solvation = -2296.294135 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93947 -36.74893 -33.18464 -31.35355 -30.90889 -29.29389 -26.02401 -23.76357 -23.41597 -21.81188 -19.88360 -19.44541 -17.57633 -16.65173 -15.01276 -14.43292 -14.25047 -13.85156 -13.63775 -13.37382 -12.82255 -12.71643 -12.16904 -11.78544 -11.49793 -11.09712 -10.73814 -10.52247 -10.13907 -10.04271 -10.01737 -9.79847 -9.49187 -8.61701 -8.32493 -8.18459 -7.21358 -6.25368 -3.94945 2.06942 2.97530 3.05444 3.48323 3.49301 3.68165 4.57880 4.97315 5.12363 5.41407 5.47175 5.70059 5.77091 5.95307 6.15190 6.18673 6.22371 6.38440 6.48493 6.73327 6.81148 7.04464 7.11165 7.29241 7.36165 7.39874 7.79196 7.99513 8.33880 8.54655 8.70054 8.98534 9.73538 11.10774 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046107 B = 0.007375 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.142469 B = 3795.530859 C = 4020.068263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.026 0.974 5 C -0.570 4.570 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.130 3.870 15 C -0.218 4.218 16 C 0.054 3.946 17 N -0.306 5.306 18 N -0.484 5.484 19 H 0.435 0.565 20 C 0.071 3.929 21 H 0.033 0.967 22 H 0.027 0.973 23 H 0.072 0.928 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.269 0.731 27 H 0.329 0.671 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.178 0.822 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 2.618 -10.975 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.095 3.905 4 H 0.044 0.956 5 C -0.608 4.608 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.303 5.303 14 C 0.000 4.000 15 C -0.230 4.230 16 C -0.133 4.133 17 N -0.129 5.129 18 N -0.193 5.193 19 H 0.278 0.722 20 C -0.077 4.077 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.195 0.805 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.772 3.639 -10.243 10.898 hybrid contribution 0.209 -0.871 -1.315 1.591 sum -0.563 2.767 -11.558 11.898 Atomic orbital electron populations 1.21591 0.96822 0.99042 1.01424 1.22268 0.96156 1.01521 0.99391 1.19349 0.95566 0.88339 0.87295 0.95597 1.21831 1.29906 1.17984 0.91115 0.92782 1.25692 0.95843 0.97133 0.99978 1.70804 1.24665 1.24555 1.35594 0.83580 0.75561 0.75560 0.75801 1.21017 1.21590 1.21570 1.60785 1.05012 1.62293 1.02253 1.20160 0.97628 0.94451 0.87795 1.20240 1.04687 0.97890 1.00192 1.23799 0.98532 0.98544 0.92437 1.77227 1.13149 0.98392 1.24147 1.46238 1.34807 1.18995 1.19225 0.72180 1.22394 0.99739 0.96967 0.88593 0.94813 0.95419 0.90943 0.95959 0.91615 0.91927 0.85338 0.91392 0.95685 0.80492 0.80744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.38 37.15 0.35 -2.37 16 2 C -0.15 -3.45 5.45 -26.73 -0.15 -3.60 16 3 C 0.20 4.92 1.95 -68.87 -0.13 4.78 16 4 H 0.03 0.69 7.32 -51.93 -0.38 0.31 16 5 C -0.57 -15.51 7.18 -34.44 -0.25 -15.76 16 6 H 0.05 1.51 7.82 -52.48 -0.41 1.10 16 7 C 0.02 0.47 5.29 -17.82 -0.09 0.37 16 8 N -0.92 -27.01 13.20 55.43 0.73 -26.28 16 9 Si 1.07 25.04 29.91 -169.99 -5.08 19.96 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.67 -14.09 6.18 -109.22 -0.67 -14.76 16 14 C 0.13 2.29 5.96 -4.98 -0.03 2.26 16 15 C -0.22 -3.40 5.66 -105.05 -0.59 -3.99 16 16 C 0.05 0.80 11.96 -17.37 -0.21 0.59 16 17 N -0.31 -4.58 12.70 30.62 0.39 -4.19 16 18 N -0.48 -6.02 7.36 30.44 0.22 -5.80 16 19 H 0.44 3.79 8.96 -182.61 -1.64 2.15 16 20 C 0.07 0.95 11.90 -17.23 -0.21 0.75 16 21 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 1.66 6.88 -51.93 -0.36 1.31 16 24 H 0.02 0.45 7.13 -51.93 -0.37 0.08 16 25 H 0.07 1.63 6.17 -51.93 -0.32 1.31 16 26 H 0.27 7.83 5.62 -40.82 -0.23 7.60 16 27 H 0.33 6.73 6.79 -39.29 -0.27 6.47 16 28 H 0.07 1.21 7.95 -51.93 -0.41 0.80 16 29 H 0.03 0.43 7.20 -51.93 -0.37 0.06 16 30 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 258.17 15.07 3.89 3.89 Total: -1.00 -30.88 258.17 -7.00 -37.88 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.17 Total: 6.26 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.31 Total: -16.96 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.67 Total: -51.03 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.88 -7.00 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308437011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.951 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds