Wall clock time and date at job start Sun Mar 29 2020 21:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47286 * 2 1 4 4 H 1.08995 * 109.47210 * 175.06470 * 3 2 1 5 5 C 1.50698 * 109.46798 * 55.06397 * 3 2 1 6 6 H 1.08003 * 120.00036 * 245.69763 * 5 3 2 7 7 C 1.37882 * 120.00097 * 65.70409 * 5 3 2 8 8 N 1.31509 * 119.99984 * 5.48830 * 7 5 3 9 9 Si 1.86806 * 119.99868 * 185.49564 * 7 5 3 10 10 H 1.48504 * 109.46595 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.46903 * 299.99465 * 9 7 5 12 12 H 1.48501 * 109.47018 * 59.99766 * 9 7 5 13 13 N 1.46893 * 109.46898 * 295.06657 * 3 2 1 14 14 C 1.46900 * 111.00201 * 279.82602 * 13 3 2 15 15 C 1.50699 * 109.47367 * 185.02226 * 14 13 3 16 16 C 1.39870 * 126.03987 * 269.68911 * 15 14 13 17 17 N 1.30835 * 108.19822 * 179.81721 * 16 15 14 18 18 N 1.40085 * 108.20787 * 0.44451 * 17 16 15 19 19 H 0.97001 * 126.03737 * 179.69475 * 18 17 16 20 20 C 1.34943 * 107.92455 * 359.71332 * 18 17 16 21 21 H 1.09000 * 109.46833 * 65.00798 * 1 2 3 22 22 H 1.08998 * 109.47633 * 185.00669 * 1 2 3 23 23 H 1.09003 * 109.47251 * 305.01202 * 1 2 3 24 24 H 1.09000 * 109.47630 * 239.99572 * 2 1 3 25 25 H 1.09002 * 109.46791 * 119.99717 * 2 1 3 26 26 H 0.96998 * 120.00342 * 355.15517 * 8 7 5 27 27 H 1.00906 * 111.00326 * 43.77923 * 13 3 2 28 28 H 1.08998 * 109.47002 * 305.02877 * 14 13 3 29 29 H 1.09004 * 109.47087 * 65.01908 * 14 13 3 30 30 H 1.07999 * 125.89827 * 0.02562 * 16 15 14 31 31 H 1.08002 * 126.13085 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7568 3.0048 0.9888 7 6 1.7643 1.8251 2.4551 8 7 2.6773 0.9032 2.6698 9 14 0.9063 2.6439 3.8984 10 1 1.4297 2.0814 5.1692 11 1 1.1618 4.1062 3.8614 12 1 -0.5551 2.3943 3.8119 13 7 1.6500 2.0997 -1.2545 14 6 2.5595 1.7302 -2.3473 15 6 2.2046 2.5156 -3.5836 16 6 1.3028 2.1222 -4.5777 17 7 1.2575 3.0644 -5.4843 18 7 2.1380 4.0840 -5.1004 19 1 2.3091 4.9043 -5.5889 20 6 2.7066 3.7232 -3.9309 21 1 -0.3633 0.4342 -0.9315 22 1 -0.3634 -1.0237 0.0897 23 1 -0.3634 0.5896 0.8417 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 3.0721 0.4282 1.9219 27 1 0.6931 1.8858 -1.4926 28 1 3.5861 1.9538 -2.0569 29 1 2.4646 0.6642 -2.5543 30 1 0.7386 1.2014 -4.5925 31 1 3.4320 4.2958 -3.3721 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308437011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:15 Heat of formation + Delta-G solvation = 43.293333 kcal Electronic energy + Delta-G solvation = -13618.483096 eV Core-core repulsion = 11321.244556 eV Total energy + Delta-G solvation = -2297.238540 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.03847 -38.53386 -34.92420 -32.96750 -32.18903 -30.72268 -27.82812 -25.61732 -25.02401 -22.91135 -21.39217 -20.97548 -18.93751 -18.40627 -16.60969 -15.92740 -15.51956 -15.36529 -15.29990 -15.07458 -14.39278 -14.16430 -13.72462 -13.31046 -13.07522 -12.95876 -12.57337 -12.07369 -11.93413 -11.85200 -11.65603 -11.45487 -10.60911 -10.56500 -10.30833 -9.50065 -8.89664 -8.44472 -6.15248 0.99193 1.58110 1.64891 1.81494 1.84000 2.09444 2.64225 3.31077 3.80643 3.89774 4.11157 4.37764 4.40410 4.46709 4.57081 4.65633 4.76477 4.85266 5.00277 5.17706 5.28159 5.29566 5.46581 5.60726 5.67119 6.05404 6.28833 6.46091 6.62382 6.73099 6.86421 6.88980 7.60817 8.91679 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046107 B = 0.007375 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.142469 B = 3795.530859 C = 4020.068263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.146 4.146 3 C 0.207 3.793 4 H -0.004 1.004 5 C -0.574 4.574 6 H 0.043 0.957 7 C -0.029 4.029 8 N -0.944 5.944 9 Si 1.107 2.893 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.272 1.272 13 N -0.677 5.677 14 C 0.138 3.862 15 C -0.246 4.246 16 C 0.050 3.950 17 N -0.327 5.327 18 N -0.470 5.470 19 H 0.452 0.548 20 C 0.082 3.918 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.260 0.740 27 H 0.332 0.668 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.194 0.806 31 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 3.279 -11.936 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.186 4.186 3 C 0.098 3.902 4 H 0.013 0.987 5 C -0.613 4.613 6 H 0.062 0.938 7 C -0.227 4.227 8 N -0.583 5.583 9 Si 0.931 3.069 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.198 1.198 13 N -0.308 5.308 14 C 0.008 3.992 15 C -0.257 4.257 16 C -0.136 4.136 17 N -0.150 5.150 18 N -0.180 5.180 19 H 0.298 0.702 20 C -0.067 4.067 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.151 0.849 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.211 0.789 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.524 4.322 -11.257 12.154 hybrid contribution 0.483 -1.033 -1.112 1.593 sum -1.041 3.289 -12.369 12.841 Atomic orbital electron populations 1.21499 0.95194 1.00117 1.01353 1.22126 0.97511 1.00046 0.98910 1.19118 0.93472 0.89389 0.88240 0.98655 1.22097 1.29227 1.17596 0.92361 0.93834 1.26916 0.95803 0.97135 1.02833 1.70905 1.26214 1.25927 1.35285 0.83042 0.75554 0.75366 0.72968 1.21428 1.20261 1.19781 1.60677 1.05764 1.62183 1.02156 1.20046 0.96436 0.95145 0.87553 1.20110 1.06611 0.99012 1.00003 1.24074 0.98366 0.99162 0.91997 1.77197 1.14118 0.99025 1.24631 1.46261 1.33704 1.19148 1.18871 0.70184 1.22735 0.99113 0.96340 0.88513 0.92743 0.93306 0.93528 0.93942 0.94484 0.92953 0.84948 0.92135 0.95236 0.78919 0.78512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.38 71.98 0.68 -4.30 16 2 C -0.15 -6.52 5.45 30.59 0.17 -6.35 16 3 C 0.21 10.08 1.95 44.17 0.09 10.17 16 4 H 0.00 -0.24 7.32 -2.39 -0.02 -0.26 16 5 C -0.57 -31.40 7.18 25.60 0.18 -31.21 16 6 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 7 C -0.03 -1.63 5.29 84.66 0.45 -1.18 16 8 N -0.94 -56.46 13.20 21.45 0.28 -56.18 16 9 Si 1.11 50.19 29.91 68.60 2.05 52.25 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.68 -27.79 6.18 -499.47 -3.09 -30.87 16 14 C 0.14 4.72 5.96 85.56 0.51 5.23 16 15 C -0.25 -7.19 5.66 -20.14 -0.11 -7.31 16 16 C 0.05 1.39 11.96 85.24 1.02 2.41 16 17 N -0.33 -9.05 12.70 -57.02 -0.72 -9.78 16 18 N -0.47 -10.49 7.36 -57.59 -0.42 -10.91 16 19 H 0.45 6.63 8.96 -213.33 -1.91 4.72 16 20 C 0.08 2.02 11.90 83.54 0.99 3.01 16 21 H 0.05 1.92 6.68 -2.39 -0.02 1.91 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.05 2.09 6.88 -2.39 -0.02 2.08 16 24 H 0.04 1.69 7.13 -2.39 -0.02 1.67 16 25 H 0.04 1.86 6.17 -2.39 -0.01 1.84 16 26 H 0.26 15.56 5.62 -92.71 -0.52 15.04 16 27 H 0.33 13.13 6.79 -89.69 -0.61 12.52 16 28 H 0.06 2.13 7.95 -2.39 -0.02 2.11 16 29 H 0.03 0.98 7.20 -2.38 -0.02 0.96 16 30 H 0.19 4.44 8.06 -2.91 -0.02 4.41 16 31 H 0.20 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -65.52 258.17 0.94 -64.58 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -1.13 Total: 20.44 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 3.97 Total: -29.52 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.95 Total: -107.74 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.25 kcal Total: -65.52 0.94 -64.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308437011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.875 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds