Wall clock time and date at job start Sun Mar 29 2020 21:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 H 1.09002 * 109.47424 * 185.18147 * 3 2 1 5 5 C 1.50706 * 109.46952 * 305.18015 * 3 2 1 6 6 H 1.07999 * 119.99980 * 119.99858 * 5 3 2 7 7 C 1.37881 * 119.99834 * 299.99683 * 5 3 2 8 8 N 1.31509 * 119.99964 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99991 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47144 * 89.99905 * 9 7 5 11 11 H 1.48505 * 109.47203 * 209.99968 * 9 7 5 12 12 H 1.48502 * 109.47182 * 330.00248 * 9 7 5 13 13 N 1.46904 * 109.47005 * 65.17341 * 3 2 1 14 14 C 1.46903 * 110.99287 * 85.90630 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.81881 * 14 13 3 16 16 C 1.39876 * 126.03479 * 269.68785 * 15 14 13 17 17 N 1.30842 * 108.19817 * 179.81767 * 16 15 14 18 18 N 1.40085 * 108.20662 * 0.43976 * 17 16 15 19 19 H 0.96998 * 126.03919 * 179.69416 * 18 17 16 20 20 C 1.34951 * 107.92207 * 359.71964 * 18 17 16 21 21 H 1.09004 * 109.47357 * 54.85662 * 1 2 3 22 22 H 1.09001 * 109.47373 * 294.85763 * 1 2 3 23 23 H 1.08999 * 109.46752 * 174.85190 * 1 2 3 24 24 H 1.08999 * 109.47222 * 119.99538 * 2 1 3 25 25 H 1.08997 * 109.47464 * 240.00419 * 2 1 3 26 26 H 0.97000 * 120.00231 * 180.02562 * 8 7 5 27 27 H 1.00897 * 111.00324 * 321.94994 * 13 3 2 28 28 H 1.08994 * 109.46864 * 294.81046 * 14 13 3 29 29 H 1.08994 * 109.47486 * 54.81733 * 14 13 3 30 30 H 1.07996 * 125.90210 * 359.97438 * 16 15 14 31 31 H 1.07999 * 126.12221 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4440 -0.0928 5 6 1.4356 2.1890 -1.1613 6 1 0.8265 3.0629 -0.9834 7 6 1.6604 1.7562 -2.4510 8 7 1.1334 2.4079 -3.4645 9 14 2.7134 0.2443 -2.7587 10 1 1.8521 -0.9653 -2.7675 11 1 3.3962 0.3754 -4.0710 12 1 3.7290 0.1210 -1.6823 13 7 1.6549 2.0980 1.2570 14 6 2.6439 1.8365 2.3114 15 6 2.2841 2.6251 3.5442 16 6 2.7178 3.9196 3.8486 17 7 2.1940 4.2668 4.9963 18 7 1.4174 3.1987 5.4639 19 1 0.9169 3.1778 6.2945 20 6 1.4892 2.2039 4.5549 21 1 -0.3634 0.5916 -0.8404 22 1 -0.3634 0.4320 0.9324 23 1 -0.3633 -1.0235 -0.0922 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.2912 2.1032 -4.3718 27 1 0.7324 1.8103 1.5471 28 1 2.6488 0.7728 2.5491 29 1 3.6328 2.1359 1.9644 30 1 3.3700 4.5285 3.2402 31 1 0.9995 1.2436 4.6220 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308437012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:16 Heat of formation + Delta-G solvation = 53.213544 kcal Electronic energy + Delta-G solvation = -13643.858526 eV Core-core repulsion = 11347.050159 eV Total energy + Delta-G solvation = -2296.808367 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.98116 -38.46033 -34.72455 -33.40057 -32.17870 -30.71085 -28.58488 -25.48533 -24.89528 -22.82646 -21.32632 -20.86380 -18.91873 -18.17281 -16.96001 -16.30587 -15.64078 -15.32118 -15.11479 -14.87761 -14.52608 -14.28852 -13.99691 -13.71718 -12.95215 -12.74181 -12.50497 -12.34030 -12.09925 -11.61052 -11.55197 -11.20136 -11.04085 -10.63078 -10.50268 -9.44688 -8.82153 -8.18831 -6.18022 1.04476 1.33878 1.39222 1.48422 1.87943 2.16214 2.38620 3.16447 3.78851 4.03107 4.14235 4.31126 4.38352 4.41803 4.55581 4.70930 4.89499 4.94869 5.01408 5.12625 5.22849 5.30780 5.37927 5.65202 5.72542 5.80041 6.15268 6.53351 6.78710 6.82628 6.87087 6.92967 7.45641 8.98859 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050644 B = 0.007687 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.745787 B = 3641.680841 C = 3790.594869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.156 4.156 3 C 0.190 3.810 4 H 0.026 0.974 5 C -0.484 4.484 6 H 0.032 0.968 7 C 0.011 3.989 8 N -0.955 5.955 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.304 1.304 12 H -0.248 1.248 13 N -0.682 5.682 14 C 0.137 3.863 15 C -0.244 4.244 16 C 0.055 3.945 17 N -0.334 5.334 18 N -0.471 5.471 19 H 0.451 0.549 20 C 0.075 3.925 21 H 0.039 0.961 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.336 0.664 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.184 0.816 31 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -6.318 16.356 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.195 4.195 3 C 0.080 3.920 4 H 0.044 0.956 5 C -0.523 4.523 6 H 0.051 0.949 7 C -0.185 4.185 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.232 1.232 12 H -0.172 1.172 13 N -0.314 5.314 14 C 0.007 3.993 15 C -0.256 4.256 16 C -0.131 4.131 17 N -0.157 5.157 18 N -0.181 5.181 19 H 0.298 0.702 20 C -0.074 4.074 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.201 0.799 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.602 -4.770 16.894 17.627 hybrid contribution -0.066 -1.770 -0.909 1.991 sum 1.536 -6.540 15.985 17.339 Atomic orbital electron populations 1.21574 0.95163 1.00473 1.01861 1.22417 0.97856 0.99299 0.99927 1.19474 0.94965 0.89217 0.88368 0.95601 1.21173 1.29656 1.11298 0.90199 0.94937 1.25702 0.97082 0.99881 0.95883 1.70051 1.47611 1.42679 0.99314 0.85938 0.79891 0.80259 0.76773 1.19349 1.23215 1.17247 1.60471 1.05097 1.63040 1.02747 1.20125 0.95605 0.95964 0.87577 1.20174 1.08544 0.97320 0.99592 1.24012 0.99415 0.95916 0.93790 1.77231 1.12607 1.11051 1.14814 1.46263 1.40348 1.10863 1.20577 0.70212 1.22857 0.98882 0.95866 0.89767 0.94162 0.91962 0.92683 0.91223 0.94670 0.92910 0.84505 0.93833 0.91758 0.79902 0.77331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.40 71.98 0.68 -4.22 16 2 C -0.16 -6.01 5.22 30.60 0.16 -5.85 16 3 C 0.19 8.43 1.93 44.17 0.09 8.52 16 4 H 0.03 1.20 6.76 -2.39 -0.02 1.18 16 5 C -0.48 -27.25 7.83 25.60 0.20 -27.05 16 6 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 7 C 0.01 0.61 5.42 84.66 0.46 1.07 16 8 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 9 Si 0.94 44.57 24.32 68.60 1.67 46.24 16 10 H -0.27 -11.99 6.92 99.48 0.69 -11.30 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 12 H -0.25 -10.78 6.53 99.48 0.65 -10.13 16 13 N -0.68 -26.14 6.19 -499.44 -3.09 -29.23 16 14 C 0.14 4.16 5.99 85.56 0.51 4.67 16 15 C -0.24 -6.67 5.66 -20.14 -0.11 -6.78 16 16 C 0.05 1.60 11.96 85.24 1.02 2.62 16 17 N -0.33 -9.44 12.70 -57.02 -0.72 -10.16 16 18 N -0.47 -9.69 7.36 -57.59 -0.42 -10.11 16 19 H 0.45 5.80 8.96 -213.33 -1.91 3.89 16 20 C 0.08 1.54 11.90 83.54 0.99 2.54 16 21 H 0.04 1.80 6.85 -2.38 -0.02 1.78 16 22 H 0.06 1.97 6.63 -2.39 -0.02 1.96 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 2.20 7.50 -2.39 -0.02 2.18 16 25 H 0.04 1.45 3.42 -2.39 -0.01 1.44 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.34 12.03 6.69 -89.70 -0.60 11.43 16 28 H 0.04 1.15 7.53 -2.39 -0.02 1.13 16 29 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 30 H 0.18 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.21 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -70.05 253.31 0.28 -69.77 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -1.44 Total: 17.77 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 3.99 Total: -24.49 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -3.94 Total: -109.29 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.67 Total: 46.24 kcal Total: -70.05 0.28 -69.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308437012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.988 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds