Wall clock time and date at job start Sun Mar 29 2020 22:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 269.99975 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99711 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00219 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46794 * 90.00022 * 9 7 5 11 11 H 1.48502 * 109.47140 * 210.00005 * 9 7 5 12 12 H 1.48501 * 109.46982 * 330.00118 * 9 7 5 13 13 C 1.39989 * 119.99811 * 179.97438 * 2 1 3 14 14 C 1.40426 * 125.97528 * 184.71642 * 13 2 1 15 15 C 1.35256 * 107.86151 * 179.83057 * 14 13 2 16 16 N 1.34956 * 107.86180 * 0.43279 * 15 14 13 17 17 C 1.46507 * 125.97400 * 179.72742 * 16 15 14 18 18 N 1.31227 * 125.97485 * 5.03514 * 13 2 1 19 19 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 20 20 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 21 21 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 22 22 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 23 23 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 24 24 H 1.09001 * 109.47194 * 299.99493 * 4 3 2 25 25 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 26 26 H 0.97000 * 119.99684 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.07115 * 359.97134 * 14 13 2 28 28 H 1.07995 * 126.07302 * 180.13358 * 15 14 13 29 29 H 1.09007 * 109.46694 * 269.97317 * 17 16 15 30 30 H 1.08993 * 109.47128 * 29.97442 * 17 16 15 31 31 H 1.08999 * 109.47287 * 149.97333 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2068 3.0150 -1.4425 6 1 3.4767 3.4827 -0.5072 7 6 3.5521 3.6117 -2.6366 8 7 4.2097 4.7505 -2.6366 9 14 3.0857 2.8024 -4.2544 10 1 1.7497 3.2882 -4.6837 11 1 4.0937 3.1470 -5.2890 12 1 3.0429 1.3287 -4.0764 13 6 2.1649 -1.2124 0.0005 14 6 3.5582 -1.3605 0.0941 15 6 3.8377 -2.6835 0.0639 16 7 2.6705 -3.3506 -0.0542 17 6 2.5145 -4.8054 -0.1294 18 7 1.6342 -2.4089 -0.0921 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3632 0.8900 0.5137 22 1 3.1500 1.1383 0.5139 23 1 1.6085 2.0283 0.5138 24 1 3.0417 0.9506 -1.9563 25 1 1.5003 1.8406 -1.9564 26 1 4.4530 5.1701 -3.4767 27 1 4.2786 -0.5602 0.1777 28 1 4.8208 -3.1272 0.1190 29 1 2.5534 -5.1214 -1.1719 30 1 3.3194 -5.2863 0.4263 31 1 1.5547 -5.0906 0.3012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308437768.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:45 Heat of formation + Delta-G solvation = 87.511387 kcal Electronic energy + Delta-G solvation = -13499.025038 eV Core-core repulsion = 11203.703937 eV Total energy + Delta-G solvation = -2295.321101 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.64735 -36.49022 -33.13516 -32.16433 -30.50262 -29.28930 -27.04531 -25.60011 -23.59191 -21.01086 -20.37816 -18.96692 -17.08656 -16.59351 -15.22575 -15.15289 -14.45383 -14.12431 -13.68310 -13.63094 -12.77777 -12.57918 -12.45479 -12.36468 -12.20907 -11.66961 -11.49324 -10.93182 -10.49790 -10.12651 -9.85987 -9.77445 -9.46990 -9.20711 -8.52204 -8.31745 -6.93736 -6.03567 -4.01768 2.30135 2.73747 3.33475 3.40693 3.48327 3.48648 3.86484 4.48105 4.78565 5.07055 5.19662 5.31494 5.40239 5.57648 5.68227 5.93207 6.12007 6.14924 6.15945 6.24428 6.43622 6.71415 6.72601 7.23280 7.34471 7.41636 7.58501 7.82669 8.12590 8.42224 8.53521 9.00419 9.59677 11.09538 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.007807 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.414307 B = 3585.825762 C = 3781.288555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.606 5.606 3 C 0.148 3.852 4 C -0.028 4.028 5 C -0.519 4.519 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.903 5.903 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.350 3.650 14 C -0.295 4.295 15 C 0.067 3.933 16 N -0.391 5.391 17 C 0.114 3.886 18 N -0.367 5.367 19 H 0.039 0.961 20 H 0.059 0.941 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.019 0.981 25 H 0.012 0.988 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.168 0.832 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -16.023 5.339 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.328 5.328 3 C 0.026 3.974 4 C -0.067 4.067 5 C -0.558 4.558 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.190 1.190 13 C 0.093 3.907 14 C -0.328 4.328 15 C -0.078 4.078 16 N -0.175 5.175 17 C -0.028 4.028 18 N -0.201 5.201 19 H 0.057 0.943 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.037 0.963 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.186 0.814 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.979 -16.581 5.120 17.804 hybrid contribution 0.629 0.150 -1.018 1.206 sum -3.351 -16.431 4.102 17.263 Atomic orbital electron populations 1.21411 0.79991 1.01472 1.00577 1.46051 1.04356 1.01331 1.81043 1.21538 0.95438 0.81172 0.99279 1.19972 0.96633 0.97015 0.93087 1.21022 1.35604 1.04591 0.94577 0.90825 1.24968 0.94524 0.94582 0.99075 1.69910 1.39934 1.17451 1.26891 0.86795 0.78291 0.80681 0.83667 1.20358 1.21408 1.19016 1.19299 0.90478 0.86758 0.94200 1.21225 0.94844 0.96182 1.20525 1.22294 0.91560 0.92505 1.01466 1.47893 1.03723 1.05691 1.60154 1.21619 1.03613 0.75210 1.02375 1.77360 1.10156 0.96156 1.36403 0.94270 0.92227 0.91901 0.91403 0.91290 0.96262 0.97007 0.92734 0.83385 0.81444 0.91661 0.90188 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.79 10.62 59.85 0.64 2.42 16 2 N -0.61 -11.69 3.02 -181.30 -0.55 -12.24 16 3 C 0.15 3.03 5.46 -4.04 -0.02 3.01 16 4 C -0.03 -0.70 4.37 -27.88 -0.12 -0.82 16 5 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 6 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 13 C 0.35 6.78 7.59 -154.54 -1.17 5.61 16 14 C -0.30 -5.20 9.94 -39.82 -0.40 -5.60 16 15 C 0.07 0.96 11.48 -17.24 -0.20 0.77 16 16 N -0.39 -5.83 4.01 -68.17 -0.27 -6.10 16 17 C 0.11 1.06 11.47 59.85 0.69 1.75 16 18 N -0.37 -6.81 12.00 31.41 0.38 -6.43 16 19 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 21 H 0.06 0.91 7.89 -51.93 -0.41 0.50 16 22 H 0.07 1.37 6.77 -51.93 -0.35 1.02 16 23 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 24 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 25 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.15 2.58 7.22 -52.49 -0.38 2.20 16 28 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 266.47 15.07 4.02 4.02 Total: -1.00 -33.95 266.47 -5.76 -39.71 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.42 Total: -3.53 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.02 Total: -6.02 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.33 Total: -51.91 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.95 -5.76 -39.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308437768.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.224 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds