Wall clock time and date at job start Sun Mar 29 2020 22:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 269.99975 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99711 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00219 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46794 * 90.00022 * 9 7 5 11 11 H 1.48502 * 109.47140 * 210.00005 * 9 7 5 12 12 H 1.48501 * 109.46982 * 330.00118 * 9 7 5 13 13 C 1.39989 * 119.99811 * 179.97438 * 2 1 3 14 14 C 1.40426 * 125.97528 * 184.71642 * 13 2 1 15 15 C 1.35256 * 107.86151 * 179.83057 * 14 13 2 16 16 N 1.34956 * 107.86180 * 0.43279 * 15 14 13 17 17 C 1.46507 * 125.97400 * 179.72742 * 16 15 14 18 18 N 1.31227 * 125.97485 * 5.03514 * 13 2 1 19 19 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 20 20 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 21 21 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 22 22 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 23 23 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 24 24 H 1.09001 * 109.47194 * 299.99493 * 4 3 2 25 25 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 26 26 H 0.97000 * 119.99684 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.07115 * 359.97134 * 14 13 2 28 28 H 1.07995 * 126.07302 * 180.13358 * 15 14 13 29 29 H 1.09007 * 109.46694 * 269.97317 * 17 16 15 30 30 H 1.08993 * 109.47128 * 29.97442 * 17 16 15 31 31 H 1.08999 * 109.47287 * 149.97333 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2068 3.0150 -1.4425 6 1 3.4767 3.4827 -0.5072 7 6 3.5521 3.6117 -2.6366 8 7 4.2097 4.7505 -2.6366 9 14 3.0857 2.8024 -4.2544 10 1 1.7497 3.2882 -4.6837 11 1 4.0937 3.1470 -5.2890 12 1 3.0429 1.3287 -4.0764 13 6 2.1649 -1.2124 0.0005 14 6 3.5582 -1.3605 0.0941 15 6 3.8377 -2.6835 0.0639 16 7 2.6705 -3.3506 -0.0542 17 6 2.5145 -4.8054 -0.1294 18 7 1.6342 -2.4089 -0.0921 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3632 0.8900 0.5137 22 1 3.1500 1.1383 0.5139 23 1 1.6085 2.0283 0.5138 24 1 3.0417 0.9506 -1.9563 25 1 1.5003 1.8406 -1.9564 26 1 4.4530 5.1701 -3.4767 27 1 4.2786 -0.5602 0.1777 28 1 4.8208 -3.1272 0.1190 29 1 2.5534 -5.1214 -1.1719 30 1 3.3194 -5.2863 0.4263 31 1 1.5547 -5.0906 0.3012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308437768.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:44 Heat of formation + Delta-G solvation = 65.455833 kcal Electronic energy + Delta-G solvation = -13499.981439 eV Core-core repulsion = 11203.703937 eV Total energy + Delta-G solvation = -2296.277502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.87596 -37.96969 -35.14737 -33.46623 -32.20896 -30.68530 -28.30569 -27.12907 -25.08845 -22.78550 -21.63568 -20.38415 -18.98434 -18.07396 -16.56482 -16.43846 -16.18316 -15.71461 -15.10945 -14.95267 -14.57908 -14.25808 -13.73955 -13.45328 -13.37144 -13.12693 -12.95543 -12.84101 -12.27909 -11.91432 -11.70254 -11.45323 -11.31783 -10.82435 -10.75572 -9.57655 -8.33513 -8.29015 -6.33260 1.13137 1.31833 1.34071 1.46712 1.62058 2.12959 2.34180 2.58514 3.05188 3.87437 4.09197 4.28239 4.44508 4.54064 4.55449 4.71098 4.75557 4.77446 4.88487 4.90637 4.95648 4.99535 5.32486 5.35161 5.49425 5.59529 6.14187 6.28577 6.39227 6.70637 6.74471 7.10684 7.31854 8.85871 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.007807 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.414307 B = 3585.825762 C = 3781.288555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.616 5.616 3 C 0.161 3.839 4 C -0.017 4.017 5 C -0.525 4.525 6 H 0.045 0.955 7 C 0.014 3.986 8 N -0.945 5.945 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.263 1.263 13 C 0.324 3.676 14 C -0.339 4.339 15 C 0.092 3.908 16 N -0.388 5.388 17 C 0.102 3.898 18 N -0.393 5.393 19 H 0.033 0.967 20 H 0.066 0.934 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.006 0.994 25 H 0.010 0.990 26 H 0.267 0.733 27 H 0.138 0.862 28 H 0.217 0.783 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 -18.445 4.993 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.338 5.338 3 C 0.038 3.962 4 C -0.056 4.056 5 C -0.563 4.563 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.188 1.188 13 C 0.068 3.932 14 C -0.371 4.371 15 C -0.055 4.055 16 N -0.171 5.171 17 C -0.037 4.037 18 N -0.228 5.228 19 H 0.052 0.948 20 H 0.085 0.915 21 H 0.099 0.901 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.234 0.766 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.150 -19.042 4.782 20.067 hybrid contribution 0.716 0.793 -0.842 1.361 sum -3.433 -18.248 3.940 18.982 Atomic orbital electron populations 1.21507 0.78607 1.02699 1.00563 1.46007 1.05226 1.00951 1.81636 1.21204 0.96008 0.82377 0.96590 1.19828 0.95460 0.94585 0.95742 1.21310 1.35542 1.05908 0.93581 0.93632 1.25814 0.94575 0.95120 1.02832 1.70034 1.41415 1.19038 1.28071 0.85764 0.78518 0.79586 0.79351 1.19219 1.20526 1.18777 1.19589 0.91341 0.86963 0.95323 1.21378 0.94236 0.97827 1.23680 1.22913 0.93118 0.91392 0.98110 1.48381 1.03187 1.07192 1.58306 1.22082 1.05495 0.72146 1.04013 1.77247 1.12160 0.96491 1.36867 0.94835 0.91537 0.90143 0.91605 0.90370 0.97543 0.97135 0.92403 0.84389 0.76635 0.90379 0.86303 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.49 10.62 127.77 1.36 4.84 16 2 N -0.62 -23.58 3.02 -727.50 -2.19 -25.78 16 3 C 0.16 6.66 5.46 86.38 0.47 7.13 16 4 C -0.02 -0.85 4.37 29.85 0.13 -0.72 16 5 C -0.52 -30.41 9.66 25.60 0.25 -30.16 16 6 H 0.05 2.82 7.99 -2.91 -0.02 2.80 16 7 C 0.01 0.84 5.47 84.66 0.46 1.30 16 8 N -0.94 -59.26 13.96 21.45 0.30 -58.97 16 9 Si 0.94 46.19 27.47 68.60 1.88 48.08 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.26 -12.70 6.54 99.48 0.65 -12.05 16 13 C 0.32 12.38 7.59 133.39 1.01 13.39 16 14 C -0.34 -11.69 9.94 22.11 0.22 -11.47 16 15 C 0.09 2.37 11.48 83.52 0.96 3.33 16 16 N -0.39 -10.46 4.01 -369.60 -1.48 -11.95 16 17 C 0.10 1.52 11.47 127.77 1.47 2.99 16 18 N -0.39 -14.08 12.00 -54.54 -0.65 -14.73 16 19 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.07 2.01 7.75 -2.39 -0.02 1.99 16 21 H 0.08 2.22 7.89 -2.39 -0.02 2.20 16 22 H 0.07 2.72 6.77 -2.39 -0.02 2.70 16 23 H 0.08 3.04 7.89 -2.39 -0.02 3.03 16 24 H 0.01 0.32 7.20 -2.39 -0.02 0.31 16 25 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 26 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 27 H 0.14 4.88 7.22 -2.91 -0.02 4.86 16 28 H 0.22 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.08 1.01 8.14 -2.38 -0.02 1.00 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.79 266.47 5.22 -68.57 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.04 Total: 4.13 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 6.33 Total: -9.36 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.03 Total: -111.42 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.08 kcal Total: -73.79 5.22 -68.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308437768.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.030 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds