Wall clock time and date at job start Sun Mar 29 2020 21:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47173 * 2 1 4 4 C 1.36824 * 120.00500 * 262.32468 * 3 2 1 5 5 H 1.07998 * 120.00051 * 207.66468 * 4 3 2 6 6 C 1.39074 * 119.99452 * 27.66385 * 4 3 2 7 7 N 1.31352 * 120.00252 * 2.42117 * 6 4 3 8 8 Si 1.86804 * 119.99769 * 182.42389 * 6 4 3 9 9 H 1.48508 * 109.47097 * 94.82256 * 8 6 4 10 10 H 1.48499 * 109.46838 * 214.82168 * 8 6 4 11 11 H 1.48499 * 109.47022 * 334.82314 * 8 6 4 12 12 C 1.34777 * 119.99861 * 82.33086 * 3 2 1 13 13 O 1.21655 * 120.00163 * 4.74686 * 12 3 2 14 14 C 1.46955 * 119.99907 * 184.75829 * 12 3 2 15 15 C 1.32750 * 124.63136 * 179.23371 * 14 12 3 16 16 C 1.51115 * 110.73779 * 179.73442 * 15 14 12 17 17 C 1.54578 * 104.84480 * 16.88181 * 16 15 14 18 18 C 1.51116 * 124.63446 * 359.41794 * 14 12 3 19 19 H 1.09001 * 109.46470 * 299.99530 * 1 2 3 20 20 H 1.08994 * 109.47321 * 59.99571 * 1 2 3 21 21 H 1.08997 * 109.46855 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46890 * 240.00500 * 2 1 3 23 23 H 1.08995 * 109.47828 * 120.00558 * 2 1 3 24 24 H 0.96999 * 120.00214 * 180.02562 * 7 6 4 25 25 H 1.08004 * 124.62934 * 0.02562 * 15 14 12 26 26 H 1.09002 * 110.36294 * 135.72018 * 16 15 14 27 27 H 1.08999 * 110.36563 * 258.03999 * 16 15 14 28 28 H 1.08994 * 110.98294 * 93.05277 * 17 16 15 29 29 H 1.09002 * 110.97597 * 216.84029 * 17 16 15 30 30 H 1.08997 * 110.51897 * 44.67979 * 18 14 12 31 31 H 1.09001 * 110.24293 * 282.45245 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3956 1.9735 -1.1743 5 1 3.1372 2.7585 -1.1692 6 6 1.8240 1.5645 -2.3743 7 7 0.8879 0.6430 -2.3756 8 14 2.3877 2.3255 -3.9845 9 1 3.4354 1.4693 -4.5967 10 1 1.2328 2.4339 -4.9117 11 1 2.9429 3.6781 -3.7251 12 6 2.0961 2.0684 1.1568 13 8 1.8435 1.5158 2.2108 14 6 2.4857 3.4853 1.1449 15 6 2.5773 4.2516 2.2250 16 6 3.0086 5.6513 1.8530 17 6 2.7551 5.7526 0.3315 18 6 2.8331 4.2700 -0.0989 19 1 -0.3632 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 0.4895 0.3575 -3.2126 25 1 2.3760 3.9188 3.2325 26 1 2.4084 6.3877 2.3873 27 1 4.0671 5.7927 2.0714 28 1 1.7679 6.1670 0.1270 29 1 3.5324 6.3417 -0.1553 30 1 2.1136 4.0670 -0.8921 31 1 3.8418 4.0240 -0.4307 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308451833.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:34 Heat of formation + Delta-G solvation = 0.147084 kcal Electronic energy + Delta-G solvation = -14297.138447 eV Core-core repulsion = 11965.736194 eV Total energy + Delta-G solvation = -2331.402253 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.08023 -36.89458 -35.00567 -31.50672 -30.25039 -28.41590 -27.49986 -24.90295 -22.42389 -20.67308 -19.66935 -18.28490 -16.95547 -15.43291 -15.02589 -14.52738 -14.32451 -13.69268 -13.31778 -12.46799 -12.23836 -12.02465 -11.71510 -11.32447 -11.27414 -11.08324 -11.00853 -10.92437 -10.69350 -10.54430 -10.31211 -9.77089 -9.66420 -8.78327 -8.40195 -8.13002 -7.54886 -6.30952 -3.98147 2.33627 3.10210 3.16866 3.18572 4.03155 4.44177 4.83007 5.09067 5.19344 5.38743 5.48886 5.91033 6.01491 6.14175 6.23653 6.39010 6.46762 6.64194 6.67650 6.77940 6.86599 6.94830 7.08181 7.25982 7.33622 7.43756 7.48350 7.83898 7.94207 8.48836 9.05535 9.55115 9.96670 10.61668 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026457 B = 0.015031 C = 0.010120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.075048 B = 1862.384667 C = 2766.222304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 N -0.430 5.430 4 C -0.341 4.341 5 H 0.118 0.882 6 C 0.032 3.968 7 N -0.862 5.862 8 Si 0.920 3.080 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.496 3.504 13 O -0.612 6.612 14 C -0.126 4.126 15 C -0.148 4.148 16 C -0.094 4.094 17 C -0.133 4.133 18 C -0.090 4.090 19 H 0.022 0.978 20 H 0.103 0.897 21 H 0.029 0.971 22 H 0.086 0.914 23 H 0.034 0.966 24 H 0.267 0.733 25 H 0.125 0.875 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 6.352 -0.207 6.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 N -0.146 5.146 4 C -0.469 4.469 5 H 0.135 0.865 6 C -0.172 4.172 7 N -0.500 5.500 8 Si 0.746 3.254 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.191 1.191 12 C 0.286 3.714 13 O -0.501 6.501 14 C -0.129 4.129 15 C -0.169 4.169 16 C -0.131 4.131 17 C -0.171 4.171 18 C -0.127 4.127 19 H 0.041 0.959 20 H 0.121 0.879 21 H 0.048 0.952 22 H 0.104 0.896 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.143 0.857 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.399 5.919 0.083 6.388 hybrid contribution 0.179 0.191 -0.885 0.923 sum 2.578 6.111 -0.801 6.681 Atomic orbital electron populations 1.22255 0.96684 0.99474 1.02448 1.21029 0.94662 0.83105 0.99407 1.43645 1.54173 1.10953 1.05820 1.20544 1.21872 1.20817 0.83659 0.86464 1.25488 0.95147 0.96716 0.99839 1.69995 1.24338 1.28767 1.26948 0.86014 0.78305 0.79614 0.81461 1.20371 1.20738 1.19083 1.17880 0.83398 0.85889 0.84189 1.90612 1.57547 1.70538 1.31395 1.21931 1.00415 0.94560 0.95978 1.23632 1.00239 0.94703 0.98313 1.21287 1.00503 0.95004 0.96299 1.22576 1.01289 0.97982 0.95231 1.21817 1.02172 0.91202 0.97495 0.95920 0.87926 0.95166 0.89608 0.94812 0.92162 0.85686 0.91762 0.91199 0.91529 0.91623 0.87862 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.62 37.16 0.36 -3.31 16 2 C 0.14 3.58 5.24 -4.05 -0.02 3.56 16 3 N -0.43 -11.23 2.63 -116.21 -0.31 -11.53 16 4 C -0.34 -8.47 7.26 -15.01 -0.11 -8.58 16 5 H 0.12 2.71 3.79 -52.49 -0.20 2.52 16 6 C 0.03 0.78 5.23 -17.45 -0.09 0.69 16 7 N -0.86 -21.64 7.91 55.50 0.44 -21.21 16 8 Si 0.92 18.75 29.55 -169.99 -5.02 13.73 16 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 12 C 0.50 12.96 7.54 -12.73 -0.10 12.87 16 13 O -0.61 -17.46 16.45 5.23 0.09 -17.38 16 14 C -0.13 -2.77 6.00 -102.77 -0.62 -3.38 16 15 C -0.15 -2.83 10.44 -35.98 -0.38 -3.21 16 16 C -0.09 -1.41 6.80 -26.85 -0.18 -1.59 16 17 C -0.13 -2.03 7.16 -25.08 -0.18 -2.21 16 18 C -0.09 -1.72 4.39 -26.85 -0.12 -1.84 16 19 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 20 H 0.10 2.64 5.58 -51.93 -0.29 2.35 16 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.09 2.21 6.48 -51.92 -0.34 1.88 16 23 H 0.03 0.86 7.60 -51.93 -0.39 0.46 16 24 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 25 H 0.13 2.40 8.03 -52.48 -0.42 1.98 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 2.14 6.11 -51.93 -0.32 1.82 16 31 H 0.07 1.36 7.10 -51.93 -0.37 0.99 16 LS Contribution 249.39 15.07 3.76 3.76 Total: -1.00 -28.34 249.39 -6.48 -34.82 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.00 Total: 4.81 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.43 Total: -7.00 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.13 Total: -32.74 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.09 Total: -17.38 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.34 -6.48 -34.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308451833.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.963 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds