Wall clock time and date at job start Sun Mar 29 2020 21:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47173 * 2 1 4 4 C 1.36824 * 120.00500 * 262.32468 * 3 2 1 5 5 H 1.07998 * 120.00051 * 207.66468 * 4 3 2 6 6 C 1.39074 * 119.99452 * 27.66385 * 4 3 2 7 7 N 1.31352 * 120.00252 * 2.42117 * 6 4 3 8 8 Si 1.86804 * 119.99769 * 182.42389 * 6 4 3 9 9 H 1.48508 * 109.47097 * 94.82256 * 8 6 4 10 10 H 1.48499 * 109.46838 * 214.82168 * 8 6 4 11 11 H 1.48499 * 109.47022 * 334.82314 * 8 6 4 12 12 C 1.34777 * 119.99861 * 82.33086 * 3 2 1 13 13 O 1.21655 * 120.00163 * 4.74686 * 12 3 2 14 14 C 1.46955 * 119.99907 * 184.75829 * 12 3 2 15 15 C 1.32750 * 124.63136 * 179.23371 * 14 12 3 16 16 C 1.51115 * 110.73779 * 179.73442 * 15 14 12 17 17 C 1.54578 * 104.84480 * 16.88181 * 16 15 14 18 18 C 1.51116 * 124.63446 * 359.41794 * 14 12 3 19 19 H 1.09001 * 109.46470 * 299.99530 * 1 2 3 20 20 H 1.08994 * 109.47321 * 59.99571 * 1 2 3 21 21 H 1.08997 * 109.46855 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46890 * 240.00500 * 2 1 3 23 23 H 1.08995 * 109.47828 * 120.00558 * 2 1 3 24 24 H 0.96999 * 120.00214 * 180.02562 * 7 6 4 25 25 H 1.08004 * 124.62934 * 0.02562 * 15 14 12 26 26 H 1.09002 * 110.36294 * 135.72018 * 16 15 14 27 27 H 1.08999 * 110.36563 * 258.03999 * 16 15 14 28 28 H 1.08994 * 110.98294 * 93.05277 * 17 16 15 29 29 H 1.09002 * 110.97597 * 216.84029 * 17 16 15 30 30 H 1.08997 * 110.51897 * 44.67979 * 18 14 12 31 31 H 1.09001 * 110.24293 * 282.45245 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3956 1.9735 -1.1743 5 1 3.1372 2.7585 -1.1692 6 6 1.8240 1.5645 -2.3743 7 7 0.8879 0.6430 -2.3756 8 14 2.3877 2.3255 -3.9845 9 1 3.4354 1.4693 -4.5967 10 1 1.2328 2.4339 -4.9117 11 1 2.9429 3.6781 -3.7251 12 6 2.0961 2.0684 1.1568 13 8 1.8435 1.5158 2.2108 14 6 2.4857 3.4853 1.1449 15 6 2.5773 4.2516 2.2250 16 6 3.0086 5.6513 1.8530 17 6 2.7551 5.7526 0.3315 18 6 2.8331 4.2700 -0.0989 19 1 -0.3632 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 0.4895 0.3575 -3.2126 25 1 2.3760 3.9188 3.2325 26 1 2.4084 6.3877 2.3873 27 1 4.0671 5.7927 2.0714 28 1 1.7679 6.1670 0.1270 29 1 3.5324 6.3417 -0.1553 30 1 2.1136 4.0670 -0.8921 31 1 3.8418 4.0240 -0.4307 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308451833.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:33 Heat of formation + Delta-G solvation = -15.960949 kcal Electronic energy + Delta-G solvation = -14297.836943 eV Core-core repulsion = 11965.736194 eV Total energy + Delta-G solvation = -2332.100749 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.88707 -38.48295 -37.00073 -33.43788 -32.13354 -29.91064 -29.00720 -26.79350 -24.34436 -22.18006 -21.37673 -20.09846 -18.65736 -17.28520 -16.46435 -16.28854 -16.16557 -15.47008 -15.11189 -14.45323 -13.83519 -13.53389 -13.45603 -13.13655 -12.84547 -12.77417 -12.64357 -12.42930 -12.30071 -11.99673 -11.89495 -11.69628 -11.38580 -10.68599 -10.35653 -9.74648 -9.46051 -8.17274 -5.91688 0.67240 1.50506 1.50921 1.62156 2.31195 2.56543 3.02845 3.20391 3.85154 3.96436 4.33016 4.37922 4.51427 4.62500 4.77279 4.91621 4.93680 4.95487 5.06061 5.12469 5.21141 5.29158 5.37560 5.46313 5.54884 5.70908 5.84976 5.91157 5.94276 6.54857 7.14508 7.59569 8.01233 8.76577 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026457 B = 0.015031 C = 0.010120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.075048 B = 1862.384667 C = 2766.222304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.141 3.859 3 N -0.440 5.440 4 C -0.361 4.361 5 H 0.134 0.866 6 C -0.009 4.009 7 N -0.887 5.887 8 Si 0.988 3.012 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.249 1.249 12 C 0.476 3.524 13 O -0.654 6.654 14 C -0.174 4.174 15 C -0.121 4.121 16 C -0.088 4.088 17 C -0.123 4.123 18 C -0.085 4.085 19 H 0.005 0.995 20 H 0.092 0.908 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.023 0.977 24 H 0.270 0.730 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 8.815 -0.991 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.018 3.982 3 N -0.156 5.156 4 C -0.488 4.488 5 H 0.151 0.849 6 C -0.210 4.210 7 N -0.526 5.526 8 Si 0.811 3.189 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.172 1.172 12 C 0.268 3.732 13 O -0.546 6.546 14 C -0.177 4.177 15 C -0.141 4.141 16 C -0.124 4.124 17 C -0.160 4.160 18 C -0.122 4.122 19 H 0.024 0.976 20 H 0.110 0.890 21 H 0.071 0.929 22 H 0.098 0.902 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.359 8.394 -0.706 9.069 hybrid contribution -0.135 -0.611 -0.546 0.831 sum 3.224 7.783 -1.252 8.516 Atomic orbital electron populations 1.22100 0.95920 1.00494 1.00860 1.20985 0.95285 0.83552 0.98400 1.43896 1.54029 1.11030 1.06601 1.21005 1.22785 1.21536 0.83455 0.84948 1.26350 0.94966 0.96892 1.02822 1.70096 1.25049 1.29606 1.27831 0.84970 0.77581 0.79511 0.76807 1.20320 1.20998 1.17196 1.18668 0.83156 0.87782 0.83563 1.90551 1.59564 1.71910 1.32543 1.21946 1.04208 0.92868 0.98689 1.24095 0.96098 0.96711 0.97236 1.21382 1.02383 0.92295 0.96356 1.22573 1.02880 0.95242 0.95344 1.21669 1.01387 0.93583 0.95543 0.97628 0.89021 0.92930 0.90235 0.95860 0.92015 0.86445 0.88938 0.88591 0.90953 0.88507 0.90122 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 9.62 71.98 0.69 -6.10 16 2 C 0.14 7.42 5.24 86.38 0.45 7.88 16 3 N -0.44 -23.67 2.63 -639.82 -1.68 -25.35 16 4 C -0.36 -18.04 7.26 84.12 0.61 -17.43 16 5 H 0.13 6.08 3.79 -2.91 -0.01 6.06 16 6 C -0.01 -0.42 5.23 84.97 0.44 0.02 16 7 N -0.89 -44.93 7.91 21.68 0.17 -44.76 16 8 Si 0.99 37.66 29.55 68.60 2.03 39.69 16 9 H -0.28 -10.52 7.11 99.48 0.71 -9.82 16 10 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 11 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 12 C 0.48 25.61 7.54 86.53 0.65 26.26 16 13 O -0.65 -38.76 16.45 -4.21 -0.07 -38.83 16 14 C -0.17 -7.60 6.00 -18.62 -0.11 -7.72 16 15 C -0.12 -4.40 10.44 24.64 0.26 -4.14 16 16 C -0.09 -2.23 6.80 30.52 0.21 -2.02 16 17 C -0.12 -3.24 7.16 31.67 0.23 -3.01 16 18 C -0.09 -3.09 4.39 30.52 0.13 -2.96 16 19 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 20 H 0.09 4.84 5.58 -2.39 -0.01 4.82 16 21 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.08 4.24 6.48 -2.38 -0.02 4.22 16 23 H 0.02 1.24 7.60 -2.39 -0.02 1.22 16 24 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 25 H 0.12 4.41 8.03 -2.91 -0.02 4.38 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 3.27 6.11 -2.39 -0.01 3.25 16 31 H 0.08 2.63 7.10 -2.39 -0.02 2.62 16 Total: -1.00 -62.61 249.39 5.14 -57.48 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 1.12 Total: 20.99 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 3.57 Total: -9.22 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.51 Total: -70.11 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.07 Total: -38.83 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -62.61 5.14 -57.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308451833.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.515 kcal (2) G-P(sol) polarization free energy of solvation -62.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds