Wall clock time and date at job start Sun Mar 29 2020 21:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99797 * 2 1 4 4 C 1.50709 * 109.47219 * 269.99441 * 3 2 1 5 5 H 1.08000 * 119.99354 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00233 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00117 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99685 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47125 * 90.00575 * 8 6 4 10 10 H 1.48504 * 109.47257 * 209.99877 * 8 6 4 11 11 H 1.48494 * 109.47740 * 330.00396 * 8 6 4 12 12 C 1.34775 * 120.00108 * 179.97438 * 2 1 3 13 13 O 1.21678 * 120.00303 * 180.89978 * 12 2 1 14 14 C 1.46763 * 119.99613 * 0.89569 * 12 2 1 15 15 C 1.36665 * 126.84070 * 169.66020 * 14 12 2 16 16 N 1.33323 * 107.78401 * 179.97438 * 15 14 12 17 17 C 1.30853 * 109.68594 * 0.02562 * 16 15 14 18 18 N 1.34493 * 109.16105 * 0.26175 * 17 16 15 19 19 H 0.97007 * 126.46740 * 179.73292 * 18 17 16 20 20 H 1.08997 * 109.47644 * 263.38018 * 1 2 3 21 21 H 1.09008 * 109.47211 * 23.37941 * 1 2 3 22 22 H 1.09001 * 109.47093 * 143.37654 * 1 2 3 23 23 H 1.08998 * 109.47651 * 29.99522 * 3 2 1 24 24 H 1.09003 * 109.47110 * 149.99803 * 3 2 1 25 25 H 0.97000 * 120.00278 * 179.97438 * 7 6 4 26 26 H 1.08003 * 126.10827 * 0.02562 * 15 14 12 27 27 H 1.08001 * 125.41486 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1269 2.8774 -1.6729 7 7 3.5550 3.6171 -0.6733 8 14 3.4389 3.4161 -3.4340 9 1 2.3094 4.2593 -3.9012 10 1 4.6995 4.1986 -3.4964 11 1 3.5559 2.2188 -4.3046 12 6 2.1389 -1.1672 0.0005 13 8 3.3555 -1.1673 0.0171 14 6 1.4051 -2.4381 -0.0188 15 6 1.9299 -3.6843 -0.2172 16 7 0.9280 -4.5620 -0.1585 17 6 -0.1970 -3.9325 0.0656 18 7 0.0457 -2.6126 0.1539 19 1 -0.6097 -1.9151 0.3118 20 1 -0.3634 -0.1185 1.0208 21 1 -0.3634 0.9434 -0.4078 22 1 -0.3633 -0.8248 -0.6131 23 1 1.6084 2.0284 0.5137 24 1 3.1498 1.1384 0.5139 25 1 4.0325 4.4426 -0.8506 26 1 2.9704 -3.9167 -0.3898 27 1 -1.1668 -4.3983 0.1603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308474630.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:48 Heat of formation + Delta-G solvation = 42.655869 kcal Electronic energy + Delta-G solvation = -13471.349315 eV Core-core repulsion = 11038.250038 eV Total energy + Delta-G solvation = -2433.099277 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.05810 -38.62979 -35.21035 -33.05179 -32.19449 -29.73306 -27.89600 -26.25363 -23.70928 -21.96544 -21.01114 -20.09892 -17.31677 -16.63004 -16.00877 -15.40161 -15.25949 -14.37189 -14.11286 -13.99265 -13.38546 -12.97888 -12.66473 -12.24197 -11.92530 -11.31129 -10.97480 -10.67963 -10.24232 -10.15047 -10.01061 -9.72931 -9.28057 -8.50359 -8.48714 -7.82613 -6.11268 -4.16816 1.62643 3.04773 3.07146 3.26428 3.33848 3.38357 3.72160 3.92144 4.39705 4.64549 4.90910 5.14079 5.23084 5.37959 5.47633 5.62307 5.86533 5.96878 6.69266 6.90176 7.27968 7.30362 7.38160 7.83983 7.98771 8.13044 8.20791 8.76755 8.91799 9.48744 10.96876 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.052882 B = 0.007893 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.353513 B = 3546.643451 C = 3614.983294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.598 5.598 3 C 0.245 3.755 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.580 3.420 13 O -0.522 6.522 14 C -0.066 4.066 15 C 0.050 3.950 16 N -0.503 5.503 17 C 0.191 3.809 18 N -0.561 5.561 19 H 0.426 0.574 20 H 0.048 0.952 21 H 0.089 0.911 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.048 0.952 25 H 0.265 0.735 26 H 0.181 0.819 27 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 -8.813 2.000 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.330 5.330 3 C 0.127 3.873 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.366 3.634 13 O -0.398 6.398 14 C -0.183 4.183 15 C -0.103 4.103 16 N -0.222 5.222 17 C -0.093 4.093 18 N -0.173 5.173 19 H 0.273 0.727 20 H 0.066 0.934 21 H 0.107 0.893 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.198 0.802 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -9.637 -9.418 1.964 13.617 hybrid contribution -0.444 1.573 -0.817 1.828 sum -10.081 -7.845 1.147 12.825 Atomic orbital electron populations 1.21995 0.82566 1.03623 0.99705 1.48100 1.05642 1.08013 1.71223 1.19393 0.92694 0.77402 0.97846 1.21410 1.36990 1.06462 0.92102 0.92392 1.24930 0.95155 0.96301 0.97601 1.69923 1.38109 1.14355 1.30828 0.86465 0.77733 0.78626 0.84437 1.20635 1.20972 1.19805 1.16885 0.86832 0.81559 0.78153 1.90827 1.12298 1.86204 1.50451 1.21703 0.83148 0.97955 1.15494 1.22592 0.99315 0.86851 1.01508 1.70156 0.98236 1.33802 1.20020 1.25090 1.00033 0.80552 1.03584 1.44538 1.08632 1.10150 1.54014 0.72687 0.93368 0.89252 0.92469 0.94694 0.93377 0.92583 0.80188 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 8.91 59.85 0.53 1.48 15 2 N -0.60 -12.45 2.86 -184.48 -0.53 -12.98 15 3 C 0.25 6.29 5.14 -5.19 -0.03 6.26 15 4 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 15 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 15 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 15 7 N -0.89 -26.16 13.29 55.43 0.74 -25.42 15 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 12 C 0.58 12.46 7.65 -12.82 -0.10 12.36 15 13 O -0.52 -13.37 16.49 5.21 0.09 -13.29 15 14 C -0.07 -1.14 6.65 -82.15 -0.55 -1.68 15 15 C 0.05 0.84 11.68 -17.47 -0.20 0.63 15 16 N -0.50 -7.64 11.20 -14.43 -0.16 -7.80 15 17 C 0.19 2.19 13.01 -90.58 -1.18 1.01 15 18 N -0.56 -6.94 5.12 -10.79 -0.06 -6.99 15 19 H 0.43 4.03 5.10 -40.82 -0.21 3.82 15 20 H 0.05 0.55 7.79 -51.93 -0.40 0.15 15 21 H 0.09 1.30 8.02 -51.92 -0.42 0.89 15 22 H 0.06 0.70 5.14 -51.93 -0.27 0.43 15 23 H 0.04 0.89 8.07 -51.93 -0.42 0.47 15 24 H 0.05 1.39 7.41 -51.93 -0.38 1.01 15 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 26 H 0.18 2.89 8.06 -52.48 -0.42 2.47 15 27 H 0.21 1.32 8.06 -52.49 -0.42 0.89 15 LS Contribution 241.46 15.07 3.64 3.64 Total: -1.00 -34.29 241.46 -5.73 -40.03 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -2.49 Total: -0.36 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.94 Total: 6.57 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.01 Total: -53.19 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -34.29 -5.73 -40.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308474630.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.685 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds