Wall clock time and date at job start Sun Mar 29 2020 21:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99797 * 2 1 4 4 C 1.50709 * 109.47219 * 269.99441 * 3 2 1 5 5 H 1.08000 * 119.99354 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00233 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00117 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99685 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47125 * 90.00575 * 8 6 4 10 10 H 1.48504 * 109.47257 * 209.99877 * 8 6 4 11 11 H 1.48494 * 109.47740 * 330.00396 * 8 6 4 12 12 C 1.34775 * 120.00108 * 179.97438 * 2 1 3 13 13 O 1.21678 * 120.00303 * 180.89978 * 12 2 1 14 14 C 1.46763 * 119.99613 * 0.89569 * 12 2 1 15 15 C 1.36665 * 126.84070 * 169.66020 * 14 12 2 16 16 N 1.33323 * 107.78401 * 179.97438 * 15 14 12 17 17 C 1.30853 * 109.68594 * 0.02562 * 16 15 14 18 18 N 1.34493 * 109.16105 * 0.26175 * 17 16 15 19 19 H 0.97007 * 126.46740 * 179.73292 * 18 17 16 20 20 H 1.08997 * 109.47644 * 263.38018 * 1 2 3 21 21 H 1.09008 * 109.47211 * 23.37941 * 1 2 3 22 22 H 1.09001 * 109.47093 * 143.37654 * 1 2 3 23 23 H 1.08998 * 109.47651 * 29.99522 * 3 2 1 24 24 H 1.09003 * 109.47110 * 149.99803 * 3 2 1 25 25 H 0.97000 * 120.00278 * 179.97438 * 7 6 4 26 26 H 1.08003 * 126.10827 * 0.02562 * 15 14 12 27 27 H 1.08001 * 125.41486 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1269 2.8774 -1.6729 7 7 3.5550 3.6171 -0.6733 8 14 3.4389 3.4161 -3.4340 9 1 2.3094 4.2593 -3.9012 10 1 4.6995 4.1986 -3.4964 11 1 3.5559 2.2188 -4.3046 12 6 2.1389 -1.1672 0.0005 13 8 3.3555 -1.1673 0.0171 14 6 1.4051 -2.4381 -0.0188 15 6 1.9299 -3.6843 -0.2172 16 7 0.9280 -4.5620 -0.1585 17 6 -0.1970 -3.9325 0.0656 18 7 0.0457 -2.6126 0.1539 19 1 -0.6097 -1.9151 0.3118 20 1 -0.3634 -0.1185 1.0208 21 1 -0.3634 0.9434 -0.4078 22 1 -0.3633 -0.8248 -0.6131 23 1 1.6084 2.0284 0.5137 24 1 3.1498 1.1384 0.5139 25 1 4.0325 4.4426 -0.8506 26 1 2.9704 -3.9167 -0.3898 27 1 -1.1668 -4.3983 0.1603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308474630.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:48 Heat of formation + Delta-G solvation = 18.061593 kcal Electronic energy + Delta-G solvation = -13472.415803 eV Core-core repulsion = 11038.250038 eV Total energy + Delta-G solvation = -2434.165765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.21795 -40.27709 -36.89617 -34.94534 -33.59618 -31.10512 -29.64059 -27.74138 -25.57281 -23.26286 -22.32310 -21.41788 -18.77940 -18.66687 -17.45329 -17.13524 -16.68146 -16.17414 -15.44460 -15.19110 -14.65920 -14.48095 -14.26364 -14.01807 -13.49812 -13.19757 -12.85204 -12.57957 -12.25527 -11.78274 -11.38005 -11.10933 -10.93580 -10.66441 -9.83829 -9.46170 -8.25775 -6.40867 0.35410 1.35936 1.39402 1.49614 1.89667 1.91719 2.22470 2.39981 2.43781 3.04478 3.53413 3.83360 4.01657 4.27987 4.39157 4.47682 4.69554 4.80570 4.95830 5.17128 5.43400 5.49413 5.73805 6.00072 6.36707 6.52356 6.67347 6.91864 7.16406 7.32809 8.81517 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.052882 B = 0.007893 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.353513 B = 3546.643451 C = 3614.983294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.604 5.604 3 C 0.259 3.741 4 C -0.547 4.547 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.573 3.427 13 O -0.583 6.583 14 C -0.093 4.093 15 C 0.049 3.951 16 N -0.533 5.533 17 C 0.232 3.768 18 N -0.546 5.546 19 H 0.441 0.559 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.034 0.966 24 H 0.002 0.998 25 H 0.269 0.731 26 H 0.172 0.828 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 -9.769 1.297 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.586 4.586 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.362 3.638 13 O -0.463 6.463 14 C -0.209 4.209 15 C -0.104 4.104 16 N -0.252 5.252 17 C -0.052 4.052 18 N -0.160 5.160 19 H 0.291 0.709 20 H 0.104 0.896 21 H 0.106 0.894 22 H 0.103 0.897 23 H 0.052 0.948 24 H 0.020 0.980 25 H 0.078 0.922 26 H 0.190 0.810 27 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -12.459 -10.360 1.271 16.254 hybrid contribution 0.309 1.769 -0.542 1.876 sum -12.150 -8.592 0.729 14.899 Atomic orbital electron populations 1.22347 0.78494 1.04835 1.02744 1.48055 1.08230 1.06288 1.70885 1.18880 0.91397 0.79591 0.96351 1.21665 1.37358 1.06686 0.92860 0.93006 1.25826 0.94698 0.96335 1.01995 1.70034 1.38643 1.14821 1.33031 0.85404 0.78182 0.78155 0.79003 1.18633 1.20569 1.20002 1.17438 0.86508 0.82924 0.76934 1.90775 1.15028 1.87284 1.53251 1.20897 0.85279 0.95637 1.19116 1.22640 0.99807 0.87235 1.00748 1.70215 0.98992 1.33998 1.22022 1.26271 1.00983 0.79612 0.98323 1.44386 1.06835 1.11218 1.53555 0.70894 0.89565 0.89393 0.89705 0.94829 0.97969 0.92248 0.81030 0.71450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.55 8.91 127.77 1.14 2.69 15 2 N -0.60 -25.41 2.86 -855.79 -2.44 -27.85 15 3 C 0.26 13.78 5.14 85.64 0.44 14.22 15 4 C -0.55 -31.32 9.39 25.60 0.24 -31.07 15 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 15 6 C 0.01 0.62 5.46 84.65 0.46 1.09 15 7 N -0.93 -55.31 13.29 21.44 0.28 -55.02 15 8 Si 0.97 44.56 29.54 68.60 2.03 46.58 15 9 H -0.26 -11.19 7.11 99.48 0.71 -10.49 15 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 12 C 0.57 25.27 7.65 86.47 0.66 25.93 15 13 O -0.58 -31.68 16.49 -4.28 -0.07 -31.75 15 14 C -0.09 -3.09 6.65 40.01 0.27 -2.82 15 15 C 0.05 1.62 11.68 84.10 0.98 2.60 15 16 N -0.53 -14.68 11.20 -199.56 -2.24 -16.92 15 17 C 0.23 4.18 13.01 180.33 2.35 6.52 15 18 N -0.55 -11.47 5.12 -188.05 -0.96 -12.44 15 19 H 0.44 6.31 5.10 -92.70 -0.47 5.84 15 20 H 0.09 1.67 7.79 -2.39 -0.02 1.65 15 21 H 0.09 2.40 8.02 -2.38 -0.02 2.39 15 22 H 0.08 1.78 5.14 -2.39 -0.01 1.77 15 23 H 0.03 1.77 8.07 -2.39 -0.02 1.75 15 24 H 0.00 0.13 7.41 -2.39 -0.02 0.12 15 25 H 0.27 15.02 8.31 -92.71 -0.77 14.24 15 26 H 0.17 5.73 8.06 -2.91 -0.02 5.71 15 27 H 0.27 1.37 8.06 -2.91 -0.02 1.35 15 Total: -1.00 -78.73 241.46 3.85 -74.87 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 0.72 Total: 3.37 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 6.54 Total: 19.15 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -5.36 Total: -112.23 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.07 Total: -31.75 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -78.73 3.85 -74.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308474630.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.935 kcal (2) G-P(sol) polarization free energy of solvation -78.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds