Wall clock time and date at job start Sun Mar 29 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37095 * 120.00174 * 2 1 4 4 H 1.08002 * 120.00668 * 159.67513 * 3 2 1 5 5 C 1.38953 * 119.99875 * 339.68151 * 3 2 1 6 6 N 1.31414 * 119.99797 * 344.26023 * 5 3 2 7 7 Si 1.86803 * 120.00081 * 164.25577 * 5 3 2 8 8 H 1.48500 * 109.47145 * 265.42057 * 7 5 3 9 9 H 1.48492 * 109.47207 * 25.42002 * 7 5 3 10 10 H 1.48503 * 109.46975 * 145.42134 * 7 5 3 11 11 C 1.34780 * 120.00187 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99816 * 180.02562 * 11 2 1 13 13 C 1.50691 * 120.00202 * 0.02562 * 11 2 1 14 14 H 1.09008 * 115.55135 * 325.72819 * 13 11 2 15 15 C 1.52995 * 117.49906 * 111.38859 * 13 11 2 16 16 C 1.52994 * 117.50205 * 180.02562 * 13 11 2 17 17 H 1.09003 * 117.49991 * 0.02562 * 16 13 11 18 18 C 1.53008 * 117.49952 * 145.02224 * 16 13 11 19 19 C 1.52996 * 117.49846 * 248.62207 * 18 16 13 20 20 C 1.52999 * 60.00223 * 252.51141 * 19 18 16 21 21 H 1.09005 * 109.46655 * 85.65626 * 1 2 3 22 22 H 1.09002 * 109.47052 * 205.65061 * 1 2 3 23 23 H 1.08993 * 109.47221 * 325.65727 * 1 2 3 24 24 H 0.96997 * 119.99822 * 180.02562 * 6 5 3 25 25 H 1.09006 * 117.50488 * 214.98270 * 15 13 11 26 26 H 1.09000 * 117.49836 * 0.02562 * 15 13 11 27 27 H 1.09001 * 115.54797 * 34.33540 * 18 16 13 28 28 H 1.09006 * 117.50059 * 0.02562 * 19 18 16 29 29 H 1.09000 * 117.49680 * 145.01951 * 19 18 16 30 30 H 1.09000 * 117.49695 * 252.51608 * 20 19 18 31 31 H 1.08998 * 117.51686 * 107.48144 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1801 1.2165 0.3249 5 6 1.5206 2.3532 -0.4179 6 7 0.3964 2.2861 -1.0951 7 14 2.2716 4.0159 -0.0168 8 1 1.6645 4.5453 1.2308 9 1 3.7368 3.8648 0.1712 10 1 2.0105 4.9593 -1.1335 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.4464 -2.4730 0.5540 15 6 1.4615 -3.3318 -1.2629 16 6 2.2076 -3.7626 0.0017 17 1 3.2935 -3.6676 0.0030 18 6 1.6488 -4.9556 0.7799 19 6 2.3946 -5.3863 2.0444 20 6 2.4709 -6.2460 0.7811 21 1 -0.3633 0.0778 -1.0248 22 1 -0.3633 -0.9264 0.4449 23 1 -0.3633 0.8485 0.5797 24 1 -0.0431 3.1000 -1.3872 25 1 0.5726 -3.8984 -1.5405 26 1 2.0567 -2.9535 -2.0939 27 1 0.5629 -5.0507 0.7785 28 1 3.2833 -4.8194 2.3222 29 1 1.7995 -5.7646 2.8755 30 1 1.9259 -7.1899 0.7810 31 1 3.4097 -6.2451 0.2273 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334181103.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:31 Heat of formation + Delta-G solvation = 19.356361 kcal Electronic energy + Delta-G solvation = -13599.489682 eV Core-core repulsion = 11268.920406 eV Total energy + Delta-G solvation = -2330.569276 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.04393 -37.34222 -34.95588 -34.13668 -31.51496 -26.50774 -25.06074 -23.49439 -22.66205 -22.10050 -19.87140 -18.46584 -16.83830 -16.28147 -15.46311 -14.81089 -14.19733 -14.05698 -13.76907 -13.03327 -12.64486 -11.86113 -11.63100 -11.48092 -11.32436 -11.25151 -11.04459 -10.86885 -10.77170 -10.53684 -10.31860 -10.18923 -9.63259 -9.16861 -8.97682 -8.33004 -7.64971 -6.28607 -3.81948 3.16878 3.27055 3.33207 3.58804 3.93375 4.16061 4.60069 4.60558 5.01713 5.05521 5.13883 5.26540 5.42863 5.56343 5.66658 5.71391 5.72988 5.89385 5.99356 6.14361 6.22788 6.34136 6.42747 6.54733 6.72307 6.92757 7.26959 7.60356 8.17233 8.53393 9.23221 9.48408 10.05827 10.75028 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064388 B = 0.007088 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.758939 B = 3949.527171 C = 4119.307202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.443 5.443 3 C -0.307 4.307 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.881 5.881 7 Si 0.925 3.075 8 H -0.278 1.278 9 H -0.269 1.269 10 H -0.284 1.284 11 C 0.473 3.527 12 O -0.593 6.593 13 C -0.162 4.162 14 H 0.111 0.889 15 C -0.151 4.151 16 C -0.102 4.102 17 H 0.113 0.887 18 C -0.118 4.118 19 C -0.179 4.179 20 C -0.179 4.179 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.062 0.938 24 H 0.267 0.733 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -10.514 2.572 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.160 5.160 3 C -0.435 4.435 4 H 0.117 0.883 5 C -0.174 4.174 6 N -0.520 5.520 7 Si 0.752 3.248 8 H -0.204 1.204 9 H -0.193 1.193 10 H -0.210 1.210 11 C 0.261 3.739 12 O -0.479 6.479 13 C -0.183 4.183 14 H 0.129 0.871 15 C -0.189 4.189 16 C -0.121 4.121 17 H 0.131 0.869 18 C -0.136 4.136 19 C -0.215 4.215 20 C -0.216 4.216 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.955 -10.325 2.489 10.799 hybrid contribution -0.032 0.973 0.109 0.980 sum -1.987 -9.352 2.598 9.907 Atomic orbital electron populations 1.21518 0.81134 0.98375 1.02070 1.43524 1.05551 1.04645 1.62306 1.19700 0.98560 0.83400 1.41822 0.88281 1.25316 0.96623 0.99977 0.95440 1.70034 1.18468 1.28956 1.34552 0.85921 0.79608 0.81305 0.77948 1.20436 1.19333 1.20971 1.19140 0.87340 0.83869 0.83582 1.90492 1.13949 1.87008 1.56418 1.22262 1.01324 0.91563 1.03152 0.87097 1.22882 1.02344 1.02017 0.91627 1.21706 0.98775 0.92352 0.99231 0.86898 1.21729 0.97516 0.94308 1.00076 1.22931 1.03304 1.03766 0.91548 1.22917 1.02384 0.94465 1.01833 0.92138 0.95191 0.91879 0.92321 0.88770 0.88589 0.88022 0.88567 0.89059 0.89105 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.61 8.59 59.84 0.51 3.12 16 2 N -0.44 -11.81 3.02 -122.20 -0.37 -12.18 16 3 C -0.31 -8.84 9.31 -14.93 -0.14 -8.97 16 4 H 0.10 2.99 7.39 -52.49 -0.39 2.60 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -23.96 10.72 55.50 0.59 -23.37 16 7 Si 0.93 21.12 29.58 -169.99 -5.03 16.09 16 8 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 C 0.47 12.06 7.41 -10.99 -0.08 11.98 16 12 O -0.59 -17.13 15.93 5.54 0.09 -17.04 16 13 C -0.16 -3.16 4.99 -91.78 -0.46 -3.62 16 14 H 0.11 1.95 6.40 -51.92 -0.33 1.62 16 15 C -0.15 -2.54 9.96 -26.72 -0.27 -2.80 16 16 C -0.10 -1.73 5.36 -90.61 -0.49 -2.22 16 17 H 0.11 2.15 7.67 -51.93 -0.40 1.75 16 18 C -0.12 -1.60 5.85 -90.62 -0.53 -2.13 16 19 C -0.18 -2.22 10.25 -26.73 -0.27 -2.49 16 20 C -0.18 -2.07 10.25 -26.73 -0.27 -2.34 16 21 H 0.06 1.45 7.45 -51.93 -0.39 1.07 16 22 H 0.03 0.57 5.82 -51.93 -0.30 0.27 16 23 H 0.06 1.51 7.18 -51.93 -0.37 1.14 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 27 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 264.80 15.07 3.99 3.99 Total: -1.00 -31.21 264.80 -7.08 -38.29 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.27 Total: 2.98 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.08 Total: -8.77 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.23 Total: -35.55 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.09 Total: -17.04 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.21 -7.08 -38.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334181103.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.648 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds