Wall clock time and date at job start Sun Mar 29 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37095 * 120.00174 * 2 1 4 4 H 1.08002 * 120.00668 * 159.67513 * 3 2 1 5 5 C 1.38953 * 119.99875 * 339.68151 * 3 2 1 6 6 N 1.31414 * 119.99797 * 344.26023 * 5 3 2 7 7 Si 1.86803 * 120.00081 * 164.25577 * 5 3 2 8 8 H 1.48500 * 109.47145 * 265.42057 * 7 5 3 9 9 H 1.48492 * 109.47207 * 25.42002 * 7 5 3 10 10 H 1.48503 * 109.46975 * 145.42134 * 7 5 3 11 11 C 1.34780 * 120.00187 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99816 * 180.02562 * 11 2 1 13 13 C 1.50691 * 120.00202 * 0.02562 * 11 2 1 14 14 H 1.09008 * 115.55135 * 325.72819 * 13 11 2 15 15 C 1.52995 * 117.49906 * 111.38859 * 13 11 2 16 16 C 1.52994 * 117.50205 * 180.02562 * 13 11 2 17 17 H 1.09003 * 117.49991 * 0.02562 * 16 13 11 18 18 C 1.53008 * 117.49952 * 145.02224 * 16 13 11 19 19 C 1.52996 * 117.49846 * 248.62207 * 18 16 13 20 20 C 1.52999 * 60.00223 * 252.51141 * 19 18 16 21 21 H 1.09005 * 109.46655 * 85.65626 * 1 2 3 22 22 H 1.09002 * 109.47052 * 205.65061 * 1 2 3 23 23 H 1.08993 * 109.47221 * 325.65727 * 1 2 3 24 24 H 0.96997 * 119.99822 * 180.02562 * 6 5 3 25 25 H 1.09006 * 117.50488 * 214.98270 * 15 13 11 26 26 H 1.09000 * 117.49836 * 0.02562 * 15 13 11 27 27 H 1.09001 * 115.54797 * 34.33540 * 18 16 13 28 28 H 1.09006 * 117.50059 * 0.02562 * 19 18 16 29 29 H 1.09000 * 117.49680 * 145.01951 * 19 18 16 30 30 H 1.09000 * 117.49695 * 252.51608 * 20 19 18 31 31 H 1.08998 * 117.51686 * 107.48144 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1801 1.2165 0.3249 5 6 1.5206 2.3532 -0.4179 6 7 0.3964 2.2861 -1.0951 7 14 2.2716 4.0159 -0.0168 8 1 1.6645 4.5453 1.2308 9 1 3.7368 3.8648 0.1712 10 1 2.0105 4.9593 -1.1335 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.4464 -2.4730 0.5540 15 6 1.4615 -3.3318 -1.2629 16 6 2.2076 -3.7626 0.0017 17 1 3.2935 -3.6676 0.0030 18 6 1.6488 -4.9556 0.7799 19 6 2.3946 -5.3863 2.0444 20 6 2.4709 -6.2460 0.7811 21 1 -0.3633 0.0778 -1.0248 22 1 -0.3633 -0.9264 0.4449 23 1 -0.3633 0.8485 0.5797 24 1 -0.0431 3.1000 -1.3872 25 1 0.5726 -3.8984 -1.5405 26 1 2.0567 -2.9535 -2.0939 27 1 0.5629 -5.0507 0.7785 28 1 3.2833 -4.8194 2.3222 29 1 1.7995 -5.7646 2.8755 30 1 1.9259 -7.1899 0.7810 31 1 3.4097 -6.2451 0.2273 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334181103.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:31 Heat of formation + Delta-G solvation = 0.675098 kcal Electronic energy + Delta-G solvation = -13600.299762 eV Core-core repulsion = 11268.920406 eV Total energy + Delta-G solvation = -2331.379356 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.77857 -38.75316 -36.75340 -35.72890 -33.61101 -28.49591 -26.94345 -24.93146 -24.16906 -23.09341 -21.10231 -20.24822 -18.91850 -18.07771 -16.82148 -16.52888 -16.05884 -15.72283 -15.32292 -14.70171 -14.03270 -13.77277 -13.36717 -13.15284 -13.11604 -12.68819 -12.47679 -12.33501 -12.17798 -12.09664 -12.06737 -11.68087 -11.07295 -10.89308 -10.45388 -10.26124 -9.73288 -8.36373 -5.99703 1.34185 1.39002 1.52209 1.87563 2.24944 2.63021 3.00417 3.06652 3.37008 3.67052 3.86909 3.99429 4.14896 4.24610 4.34859 4.41788 4.45963 4.71155 4.82753 4.84340 4.96890 5.07461 5.11268 5.24783 5.32963 5.36407 5.42438 5.43581 6.06016 6.46163 7.13916 7.45323 8.02554 8.65530 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064388 B = 0.007088 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.758939 B = 3949.527171 C = 4119.307202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.459 5.459 3 C -0.351 4.351 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.991 3.009 8 H -0.263 1.263 9 H -0.277 1.277 10 H -0.271 1.271 11 C 0.459 3.541 12 O -0.642 6.642 13 C -0.179 4.179 14 H 0.137 0.863 15 C -0.134 4.134 16 C -0.091 4.091 17 H 0.081 0.919 18 C -0.128 4.128 19 C -0.184 4.184 20 C -0.162 4.162 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.275 0.725 25 H 0.136 0.864 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -11.642 2.814 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.176 5.176 3 C -0.479 4.479 4 H 0.087 0.913 5 C -0.204 4.204 6 N -0.532 5.532 7 Si 0.814 3.186 8 H -0.188 1.188 9 H -0.202 1.202 10 H -0.196 1.196 11 C 0.249 3.751 12 O -0.531 6.531 13 C -0.200 4.200 14 H 0.155 0.845 15 C -0.171 4.171 16 C -0.110 4.110 17 H 0.100 0.900 18 C -0.146 4.146 19 C -0.221 4.221 20 C -0.199 4.199 21 H 0.067 0.933 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.154 0.846 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.661 -11.461 2.725 12.336 hybrid contribution 0.525 1.312 0.001 1.413 sum -3.135 -10.149 2.726 10.967 Atomic orbital electron populations 1.21476 0.79141 0.99958 1.01434 1.43815 1.06926 1.04561 1.62331 1.19638 0.98211 0.85517 1.44542 0.91329 1.26099 0.96993 1.02829 0.94431 1.70095 1.18883 1.30311 1.33864 0.84961 0.78253 0.76812 0.78536 1.18820 1.20201 1.19599 1.20200 0.87272 0.85633 0.81982 1.90442 1.16341 1.88060 1.58258 1.22159 1.02257 0.89204 1.06343 0.84515 1.23007 1.03400 1.00501 0.90209 1.21688 0.97098 0.92394 0.99786 0.90024 1.21734 0.98787 0.93673 1.00421 1.23007 1.02796 1.03955 0.92376 1.23015 1.01887 0.94624 1.00355 0.93311 0.90989 0.93262 0.91555 0.84584 0.90601 0.85714 0.90508 0.86865 0.86291 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.62 8.59 127.77 1.10 6.72 16 2 N -0.46 -25.08 3.02 -658.90 -1.99 -27.07 16 3 C -0.35 -20.96 9.31 84.04 0.78 -20.17 16 4 H 0.07 4.40 7.39 -2.91 -0.02 4.38 16 5 C 0.00 -0.08 5.04 84.93 0.43 0.35 16 6 N -0.89 -48.45 10.72 21.66 0.23 -48.22 16 7 Si 0.99 43.49 29.58 68.60 2.03 45.52 16 8 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 C 0.46 24.09 7.41 87.65 0.65 24.74 16 12 O -0.64 -39.07 15.93 -3.08 -0.05 -39.12 16 13 C -0.18 -6.81 4.99 -11.55 -0.06 -6.87 16 14 H 0.14 4.43 6.40 -2.38 -0.02 4.42 16 15 C -0.13 -4.26 9.96 30.60 0.30 -3.95 16 16 C -0.09 -3.00 5.36 -10.79 -0.06 -3.06 16 17 H 0.08 3.22 7.67 -2.39 -0.02 3.20 16 18 C -0.13 -3.10 5.85 -10.79 -0.06 -3.16 16 19 C -0.18 -4.17 10.25 30.59 0.31 -3.86 16 20 C -0.16 -3.24 10.25 30.59 0.31 -2.93 16 21 H 0.05 2.32 7.45 -2.38 -0.02 2.30 16 22 H 0.07 2.62 5.82 -2.39 -0.01 2.61 16 23 H 0.05 2.35 7.18 -2.39 -0.02 2.33 16 24 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 25 H 0.14 3.21 8.14 -2.38 -0.02 3.19 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.32 264.80 5.05 -65.27 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.11 Total: 15.81 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 3.71 Total: -12.19 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.76 Total: -75.29 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.05 Total: -39.12 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.32 5.05 -65.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334181103.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.946 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds