Wall clock time and date at job start Sun Mar 29 2020 21:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.63735 * 2 1 4 4 O 1.21293 * 119.99482 * 120.42046 * 3 2 1 5 5 N 1.34777 * 120.00290 * 300.42483 * 3 2 1 6 6 C 1.37092 * 119.99729 * 180.27555 * 5 3 2 7 7 H 1.08002 * 120.00496 * 359.72414 * 6 5 3 8 8 C 1.38958 * 120.00096 * 179.72242 * 6 5 3 9 9 N 1.31414 * 119.99347 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47274 * 89.99972 * 10 8 6 12 12 H 1.48505 * 109.46713 * 210.00050 * 10 8 6 13 13 H 1.48502 * 109.46813 * 329.99470 * 10 8 6 14 14 C 1.53031 * 109.81650 * 239.47692 * 2 1 3 15 15 C 1.50066 * 110.14294 * 289.64703 * 14 2 1 16 16 C 1.29445 * 124.07860 * 342.86692 * 15 14 2 17 17 C 1.50075 * 124.07411 * 0.47250 * 16 15 14 18 18 C 1.53024 * 110.14565 * 342.86845 * 17 16 15 19 19 H 1.08998 * 109.47357 * 60.00066 * 1 2 3 20 20 H 1.09003 * 109.47110 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47117 * 299.99474 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 23 23 H 0.97004 * 119.99790 * 179.97438 * 9 8 6 24 24 H 1.08997 * 109.35831 * 49.85594 * 14 2 1 25 25 H 1.08999 * 109.35879 * 169.44244 * 14 2 1 26 26 H 1.08003 * 117.96161 * 162.85265 * 15 14 2 27 27 H 1.07995 * 117.96471 * 180.49514 * 16 15 14 28 28 H 1.08997 * 109.35599 * 222.66587 * 17 16 15 29 29 H 1.08992 * 109.24463 * 103.00701 * 17 16 15 30 30 H 1.09000 * 109.64114 * 289.75000 * 18 17 16 31 31 H 1.09003 * 109.81596 * 169.22193 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7412 1.8117 0.9059 5 7 1.7063 2.2528 -1.0064 6 6 2.1717 3.5423 -1.0092 7 1 2.7993 3.8917 -0.2027 8 6 1.8360 4.3998 -2.0498 9 7 1.0728 3.9745 -3.0314 10 14 2.4707 6.1567 -2.0540 11 1 3.7752 6.2100 -2.7614 12 1 1.4945 7.0339 -2.7489 13 1 2.6467 6.6227 -0.6550 14 6 2.0488 -0.7312 -1.2402 15 6 1.7783 -2.2027 -1.1234 16 6 1.4898 -2.8012 -0.0125 17 6 1.3754 -2.1055 1.3123 18 6 2.0457 -0.7315 1.2457 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.1429 1.9388 -1.7310 23 1 0.8382 4.5732 -3.7577 24 1 1.5476 -0.3408 -2.1258 25 1 3.1224 -0.5675 -1.3335 26 1 1.8273 -2.7994 -2.0223 27 1 1.3212 -3.8675 -0.0407 28 1 1.8615 -2.7078 2.0798 29 1 0.3220 -1.9819 1.5634 30 1 3.1266 -0.8541 1.1775 31 1 1.7978 -0.1558 2.1375 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334718093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:52 Heat of formation + Delta-G solvation = -61.967840 kcal Electronic energy + Delta-G solvation = -14035.081766 eV Core-core repulsion = 11700.986008 eV Total energy + Delta-G solvation = -2334.095758 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.22536 -38.65975 -36.02248 -33.65600 -32.72240 -31.60535 -28.01860 -27.11700 -24.37635 -23.29273 -20.61472 -19.92761 -18.05444 -17.84321 -16.95989 -16.10381 -15.92130 -15.44051 -15.22972 -14.97778 -14.20709 -13.82634 -13.66426 -13.54356 -13.06021 -12.93449 -12.78208 -12.53263 -12.43595 -12.14483 -11.76827 -11.53422 -11.48845 -11.11971 -10.18229 -10.03635 -9.81251 -8.48927 -5.98265 1.35921 1.39518 1.48591 1.52749 2.02685 2.28324 3.16487 3.17795 3.72366 3.88041 3.99180 4.28313 4.41476 4.43713 4.49680 4.61982 4.74363 4.76660 4.96574 5.00929 5.07677 5.14225 5.21101 5.36655 5.38671 5.47822 5.85077 5.98347 6.12922 6.56588 7.09267 7.53810 8.08933 8.68415 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.059083 B = 0.008278 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.794831 B = 3381.713947 C = 3591.357849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C 0.444 3.556 4 O -0.639 6.639 5 N -0.565 5.565 6 C -0.340 4.340 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.918 5.918 10 Si 0.994 3.006 11 H -0.270 1.270 12 H -0.268 1.268 13 H -0.273 1.273 14 C -0.077 4.077 15 C -0.158 4.158 16 C -0.150 4.150 17 C -0.087 4.087 18 C -0.089 4.089 19 H 0.050 0.950 20 H 0.094 0.906 21 H 0.049 0.951 22 H 0.396 0.604 23 H 0.279 0.721 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 -11.832 1.832 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.068 4.068 3 C 0.232 3.768 4 O -0.527 6.527 5 N -0.200 5.200 6 C -0.470 4.470 7 H 0.095 0.905 8 C -0.211 4.211 9 N -0.559 5.559 10 Si 0.817 3.183 11 H -0.195 1.195 12 H -0.193 1.193 13 H -0.198 1.198 14 C -0.115 4.115 15 C -0.176 4.176 16 C -0.168 4.168 17 C -0.124 4.124 18 C -0.127 4.127 19 H 0.069 0.931 20 H 0.113 0.887 21 H 0.068 0.932 22 H 0.230 0.770 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.347 -11.465 2.236 11.914 hybrid contribution 0.219 1.109 -0.528 1.247 sum -2.128 -10.356 1.708 10.709 Atomic orbital electron populations 1.21845 0.91793 1.03593 1.01611 1.20675 0.97730 0.90172 0.98271 1.20934 0.84065 0.88782 0.83041 1.90454 1.43929 1.79058 1.39299 1.41940 1.45469 1.10655 1.21980 1.19715 1.30365 0.88468 1.08407 0.90484 1.26065 0.96561 1.04046 0.94449 1.69677 1.36434 1.38578 1.11195 0.84922 0.78271 0.76698 0.78401 1.19545 1.19268 1.19832 1.20430 1.00246 0.94526 0.96272 1.22015 1.01966 0.94211 0.99377 1.22262 1.00213 1.00542 0.93755 1.20561 1.01707 0.93632 0.96492 1.21341 0.99507 0.96168 0.95695 0.93070 0.88725 0.93181 0.76992 0.91174 0.90988 0.92642 0.85836 0.85042 0.89194 0.89312 0.93415 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 7.73 71.98 0.56 -3.65 16 2 C -0.07 -2.43 0.63 -52.79 -0.03 -2.46 16 3 C 0.44 22.45 6.42 87.66 0.56 23.01 16 4 O -0.64 -37.48 15.48 -3.07 -0.05 -37.53 16 5 N -0.57 -30.33 5.10 -306.98 -1.56 -31.89 16 6 C -0.34 -19.97 9.68 84.04 0.81 -19.16 16 7 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 8 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 9 N -0.92 -50.37 13.05 21.67 0.28 -50.08 16 10 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C -0.08 -2.56 4.74 29.66 0.14 -2.42 16 15 C -0.16 -3.91 9.41 27.03 0.25 -3.66 16 16 C -0.15 -3.23 9.16 27.04 0.25 -2.98 16 17 C -0.09 -2.03 5.49 29.66 0.16 -1.86 16 18 C -0.09 -3.00 4.33 30.73 0.13 -2.86 16 19 H 0.05 1.72 7.56 -2.39 -0.02 1.70 16 20 H 0.09 2.40 5.71 -2.39 -0.01 2.39 16 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.40 20.29 7.05 -92.71 -0.65 19.64 16 23 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 24 H 0.07 2.40 7.92 -2.39 -0.02 2.38 16 25 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 26 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 27 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.84 6.92 -2.39 -0.02 1.82 16 30 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 Total: -1.00 -67.28 254.71 4.47 -62.81 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.47 Total: 27.19 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.30 Total: -16.19 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.28 Total: -81.98 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.05 Total: -37.53 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.28 4.47 -62.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334718093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.844 kcal (2) G-P(sol) polarization free energy of solvation -67.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds