Wall clock time and date at job start Sun Mar 29 2020 21:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47511 * 2 1 4 4 C 1.37097 * 120.00273 * 89.67703 * 3 2 1 5 5 H 1.07998 * 120.00691 * 222.28988 * 4 3 2 6 6 C 1.38952 * 119.99385 * 42.29113 * 4 3 2 7 7 N 1.31410 * 120.00416 * 17.17079 * 6 4 3 8 8 Si 1.86804 * 119.99628 * 197.16564 * 6 4 3 9 9 H 1.48504 * 109.47266 * 60.00479 * 8 6 4 10 10 H 1.48500 * 109.46988 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47166 * 300.00280 * 8 6 4 12 12 C 1.34778 * 119.99952 * 269.95985 * 3 2 1 13 13 O 1.21291 * 120.00329 * 182.95752 * 12 3 2 14 14 C 1.50706 * 120.00058 * 2.96481 * 12 3 2 15 15 C 1.54635 * 111.03009 * 272.65320 * 14 12 3 16 16 C 1.51106 * 104.72354 * 217.33117 * 15 14 12 17 17 C 1.30531 * 111.10240 * 16.44118 * 16 15 14 18 18 C 1.51105 * 111.10435 * 359.97438 * 17 16 15 19 19 H 1.08999 * 109.46950 * 299.99647 * 1 2 3 20 20 H 1.08994 * 109.47314 * 59.99691 * 1 2 3 21 21 H 1.09009 * 109.47197 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47000 * 239.99816 * 2 1 3 23 23 H 1.09001 * 109.47205 * 119.99895 * 2 1 3 24 24 H 0.97001 * 120.00297 * 179.97438 * 7 6 4 25 25 H 1.08995 * 110.91307 * 36.65365 * 14 12 3 26 26 H 1.08997 * 110.38788 * 336.14114 * 15 14 12 27 27 H 1.08994 * 110.39151 * 98.52267 * 15 14 12 28 28 H 1.08000 * 124.44887 * 196.45618 * 16 15 14 29 29 H 1.07999 * 124.44888 * 180.02562 * 17 16 15 30 30 H 1.08999 * 110.38481 * 224.75730 * 18 17 16 31 31 H 1.08997 * 110.48332 * 102.42593 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2406 2.0297 1.1872 5 1 1.9365 3.0592 1.3055 6 6 2.8573 1.3623 2.2385 7 7 3.5241 0.2529 2.0117 8 14 2.7385 2.0424 3.9743 9 1 1.3122 2.1131 4.3818 10 1 3.4764 1.1522 4.9062 11 1 3.3329 3.4025 4.0148 12 6 2.2438 2.0162 -1.1672 13 8 2.6989 3.1405 -1.1680 14 6 1.9303 1.3294 -2.4715 15 6 3.1299 0.4817 -2.9547 16 6 3.1376 0.6479 -4.4565 17 6 2.4112 1.6697 -4.8200 18 6 1.7974 2.3548 -3.6212 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.9549 -0.2127 2.7455 25 1 1.0303 0.7208 -2.3843 26 1 4.0585 0.8588 -2.5262 27 1 2.9862 -0.5657 -2.6894 28 1 3.6736 0.0055 -5.1396 29 1 2.2670 1.9836 -5.8432 30 1 0.7478 2.5810 -3.8092 31 1 2.3445 3.2664 -3.3813 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335585527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:35 Heat of formation + Delta-G solvation = -19.568281 kcal Electronic energy + Delta-G solvation = -14155.518569 eV Core-core repulsion = 11823.261394 eV Total energy + Delta-G solvation = -2332.257175 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27796 -36.88263 -34.83531 -32.00559 -29.38938 -28.97830 -27.71884 -24.93931 -22.44090 -21.15940 -18.57660 -18.19740 -16.79216 -16.16256 -15.67476 -14.90245 -14.09014 -13.74115 -13.03808 -12.83364 -12.30865 -12.10514 -11.79844 -11.77727 -11.43975 -11.15837 -10.98709 -10.83610 -10.80679 -10.48771 -10.34706 -10.29343 -10.01078 -8.89047 -8.52729 -8.28546 -7.34769 -6.26099 -3.97329 2.57611 3.22385 3.27331 3.30900 3.94339 4.19293 4.86971 5.02588 5.08548 5.23724 5.61707 5.64552 5.76846 5.96325 6.11164 6.13337 6.24651 6.27542 6.33764 6.41819 6.42496 6.59134 6.76711 6.84851 6.93574 7.23431 7.28889 7.62425 8.35785 8.58830 9.25678 9.45966 10.09665 10.78114 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046662 B = 0.009580 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.912452 B = 2922.205535 C = 3047.059765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 N -0.441 5.441 4 C -0.308 4.308 5 H 0.085 0.915 6 C 0.039 3.961 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.472 3.528 13 O -0.579 6.579 14 C -0.111 4.111 15 C -0.083 4.083 16 C -0.169 4.169 17 C -0.166 4.166 18 C -0.090 4.090 19 H 0.057 0.943 20 H 0.042 0.958 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.104 0.896 24 H 0.267 0.733 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -3.370 -7.212 8.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.160 5.160 4 C -0.436 4.436 5 H 0.103 0.897 6 C -0.165 4.165 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.260 3.740 13 O -0.463 6.463 14 C -0.132 4.132 15 C -0.121 4.121 16 C -0.187 4.187 17 C -0.184 4.184 18 C -0.127 4.127 19 H 0.076 0.924 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.122 0.878 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.595 -2.962 -7.051 8.451 hybrid contribution -0.015 0.050 0.812 0.813 sum -3.609 -2.913 -6.240 7.775 Atomic orbital electron populations 1.22204 0.98328 1.00190 1.01515 1.21523 0.91746 0.85811 1.03458 1.43405 1.56472 1.11778 1.04309 1.19313 1.37738 0.98319 0.88258 0.89709 1.25430 0.94087 0.96580 1.00432 1.69883 1.30436 1.18221 1.32509 0.86148 0.78430 0.79001 0.81985 1.19922 1.20993 1.19779 1.20162 0.81418 0.87593 0.84855 1.90489 1.48456 1.20349 1.86995 1.22113 0.99141 0.97499 0.94473 1.21232 0.98610 0.99725 0.92505 1.23269 0.99992 0.98785 0.96681 1.23290 0.99534 0.97119 0.98481 1.21304 1.00524 0.99532 0.91328 0.92378 0.93940 0.93249 0.93147 0.87799 0.92289 0.89476 0.90216 0.91060 0.86220 0.86292 0.91805 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.08 37.16 0.37 -2.64 16 2 C 0.10 2.17 5.32 -4.05 -0.02 2.15 16 3 N -0.44 -11.35 2.48 -114.81 -0.29 -11.64 16 4 C -0.31 -8.68 8.81 -14.93 -0.13 -8.81 16 5 H 0.09 2.49 7.85 -52.49 -0.41 2.07 16 6 C 0.04 1.05 5.02 -17.47 -0.09 0.96 16 7 N -0.87 -23.88 11.54 55.50 0.64 -23.24 16 8 Si 0.92 20.91 29.59 -169.99 -5.03 15.88 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.47 11.85 6.77 -10.98 -0.07 11.77 16 13 O -0.58 -16.65 15.53 5.55 0.09 -16.57 16 14 C -0.11 -2.16 2.49 -90.06 -0.22 -2.38 16 15 C -0.08 -1.48 5.94 -26.82 -0.16 -1.64 16 16 C -0.17 -2.53 10.78 -35.70 -0.38 -2.92 16 17 C -0.17 -2.47 10.78 -35.70 -0.38 -2.85 16 18 C -0.09 -1.58 6.30 -26.83 -0.17 -1.75 16 19 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 20 H 0.04 0.73 7.03 -51.93 -0.37 0.37 16 21 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 22 H 0.05 1.01 5.67 -51.93 -0.29 0.71 16 23 H 0.10 2.52 5.71 -51.93 -0.30 2.22 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.09 1.56 6.02 -51.93 -0.31 1.25 16 26 H 0.08 1.61 7.88 -51.93 -0.41 1.20 16 27 H 0.07 1.17 7.38 -51.93 -0.38 0.78 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.89 6.86 -51.93 -0.36 1.53 16 LS Contribution 256.02 15.07 3.86 3.86 Total: -1.00 -30.85 256.02 -6.07 -36.92 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.08 Total: 2.90 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.26 Total: -8.12 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.36 Total: -34.88 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.85 -6.07 -36.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335585527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.351 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds