Wall clock time and date at job start Sun Mar 29 2020 21:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47511 * 2 1 4 4 C 1.37097 * 120.00273 * 89.67703 * 3 2 1 5 5 H 1.07998 * 120.00691 * 222.28988 * 4 3 2 6 6 C 1.38952 * 119.99385 * 42.29113 * 4 3 2 7 7 N 1.31410 * 120.00416 * 17.17079 * 6 4 3 8 8 Si 1.86804 * 119.99628 * 197.16564 * 6 4 3 9 9 H 1.48504 * 109.47266 * 60.00479 * 8 6 4 10 10 H 1.48500 * 109.46988 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47166 * 300.00280 * 8 6 4 12 12 C 1.34778 * 119.99952 * 269.95985 * 3 2 1 13 13 O 1.21291 * 120.00329 * 182.95752 * 12 3 2 14 14 C 1.50706 * 120.00058 * 2.96481 * 12 3 2 15 15 C 1.54635 * 111.03009 * 272.65320 * 14 12 3 16 16 C 1.51106 * 104.72354 * 217.33117 * 15 14 12 17 17 C 1.30531 * 111.10240 * 16.44118 * 16 15 14 18 18 C 1.51105 * 111.10435 * 359.97438 * 17 16 15 19 19 H 1.08999 * 109.46950 * 299.99647 * 1 2 3 20 20 H 1.08994 * 109.47314 * 59.99691 * 1 2 3 21 21 H 1.09009 * 109.47197 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47000 * 239.99816 * 2 1 3 23 23 H 1.09001 * 109.47205 * 119.99895 * 2 1 3 24 24 H 0.97001 * 120.00297 * 179.97438 * 7 6 4 25 25 H 1.08995 * 110.91307 * 36.65365 * 14 12 3 26 26 H 1.08997 * 110.38788 * 336.14114 * 15 14 12 27 27 H 1.08994 * 110.39151 * 98.52267 * 15 14 12 28 28 H 1.08000 * 124.44887 * 196.45618 * 16 15 14 29 29 H 1.07999 * 124.44888 * 180.02562 * 17 16 15 30 30 H 1.08999 * 110.38481 * 224.75730 * 18 17 16 31 31 H 1.08997 * 110.48332 * 102.42593 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2406 2.0297 1.1872 5 1 1.9365 3.0592 1.3055 6 6 2.8573 1.3623 2.2385 7 7 3.5241 0.2529 2.0117 8 14 2.7385 2.0424 3.9743 9 1 1.3122 2.1131 4.3818 10 1 3.4764 1.1522 4.9062 11 1 3.3329 3.4025 4.0148 12 6 2.2438 2.0162 -1.1672 13 8 2.6989 3.1405 -1.1680 14 6 1.9303 1.3294 -2.4715 15 6 3.1299 0.4817 -2.9547 16 6 3.1376 0.6479 -4.4565 17 6 2.4112 1.6697 -4.8200 18 6 1.7974 2.3548 -3.6212 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.9549 -0.2127 2.7455 25 1 1.0303 0.7208 -2.3843 26 1 4.0585 0.8588 -2.5262 27 1 2.9862 -0.5657 -2.6894 28 1 3.6736 0.0055 -5.1396 29 1 2.2670 1.9836 -5.8432 30 1 0.7478 2.5810 -3.8092 31 1 2.3445 3.2664 -3.3813 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335585527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:35 Heat of formation + Delta-G solvation = -38.387362 kcal Electronic energy + Delta-G solvation = -14156.334626 eV Core-core repulsion = 11823.261394 eV Total energy + Delta-G solvation = -2333.073232 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.00818 -38.46809 -36.82423 -34.02050 -31.16554 -30.46166 -29.08962 -26.92245 -24.14606 -22.83539 -20.20258 -19.57020 -18.76655 -17.98992 -17.10614 -16.77353 -15.94368 -15.52646 -14.90598 -14.49862 -13.90399 -13.71268 -13.54362 -13.17750 -13.00873 -12.91126 -12.68485 -12.59574 -12.19093 -12.10733 -12.04102 -11.96241 -11.75824 -10.90726 -10.31656 -9.75589 -9.38212 -8.32474 -6.12594 1.38110 1.39359 1.41337 1.49944 2.04192 2.29057 3.00664 3.07296 3.69506 3.82558 4.06517 4.24253 4.39723 4.42653 4.62324 4.67277 4.76582 4.83335 4.87637 4.99088 5.04051 5.10451 5.29162 5.31939 5.44052 5.56847 5.60866 6.09198 6.24074 6.57637 7.19303 7.47455 8.09304 8.69950 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046662 B = 0.009580 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.912452 B = 2922.205535 C = 3047.059765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.452 5.452 4 C -0.344 4.344 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.456 3.544 13 O -0.631 6.631 14 C -0.107 4.107 15 C -0.085 4.085 16 C -0.165 4.165 17 C -0.159 4.159 18 C -0.093 4.093 19 H 0.040 0.960 20 H 0.053 0.947 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.273 0.727 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -4.834 -8.270 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.026 4.026 3 N -0.171 5.171 4 C -0.472 4.472 5 H 0.076 0.924 6 C -0.198 4.198 7 N -0.529 5.529 8 Si 0.805 3.195 9 H -0.186 1.186 10 H -0.195 1.195 11 H -0.205 1.205 12 C 0.246 3.754 13 O -0.518 6.518 14 C -0.129 4.129 15 C -0.123 4.123 16 C -0.183 4.183 17 C -0.176 4.176 18 C -0.131 4.131 19 H 0.059 0.941 20 H 0.072 0.928 21 H 0.104 0.896 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.173 0.827 29 H 0.174 0.826 30 H 0.101 0.899 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.437 -4.467 -8.114 10.270 hybrid contribution 0.272 0.508 1.157 1.292 sum -4.165 -3.959 -6.958 9.024 Atomic orbital electron populations 1.22097 0.95357 1.02471 1.01242 1.21637 0.94167 0.83620 1.03179 1.43716 1.56361 1.13014 1.03981 1.19305 1.39654 0.98002 0.90267 0.92365 1.26184 0.93112 0.96763 1.03785 1.69956 1.30255 1.18838 1.33801 0.85193 0.79050 0.77993 0.77278 1.18637 1.19491 1.20498 1.21147 0.80397 0.87219 0.86615 1.90440 1.50676 1.22678 1.88028 1.22110 1.00679 0.98220 0.91850 1.21237 0.96135 0.99935 0.94973 1.23381 1.00436 0.99660 0.94804 1.23426 0.98898 0.96368 0.98913 1.21318 1.01671 0.98033 0.92064 0.94073 0.92795 0.89596 0.91242 0.90135 0.91736 0.87355 0.93655 0.89530 0.82707 0.82645 0.89943 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 10.08 71.98 0.73 -4.66 16 2 C 0.10 4.23 5.32 86.38 0.46 4.68 16 3 N -0.45 -23.90 2.48 -635.54 -1.58 -25.48 16 4 C -0.34 -20.09 8.81 84.04 0.74 -19.35 16 5 H 0.06 3.62 7.85 -2.91 -0.02 3.60 16 6 C 0.00 0.23 5.02 84.93 0.43 0.65 16 7 N -0.89 -49.17 11.54 21.66 0.25 -48.92 16 8 Si 0.98 43.27 29.59 68.60 2.03 45.30 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 C 0.46 23.62 6.77 87.66 0.59 24.21 16 13 O -0.63 -38.19 15.53 -3.06 -0.05 -38.24 16 14 C -0.11 -4.11 2.49 -10.43 -0.03 -4.14 16 15 C -0.09 -2.94 5.94 30.53 0.18 -2.76 16 16 C -0.17 -4.40 10.78 26.26 0.28 -4.12 16 17 C -0.16 -4.19 10.78 26.26 0.28 -3.91 16 18 C -0.09 -3.19 6.30 30.53 0.19 -3.00 16 19 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 20 H 0.05 1.75 7.03 -2.39 -0.02 1.74 16 21 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 22 H 0.07 2.69 5.67 -2.39 -0.01 2.68 16 23 H 0.08 3.91 5.71 -2.39 -0.01 3.89 16 24 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.11 3.65 6.02 -2.39 -0.01 3.64 16 26 H 0.04 1.87 7.88 -2.39 -0.02 1.85 16 27 H 0.09 2.66 7.38 -2.39 -0.02 2.64 16 28 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 2.54 6.86 -2.39 -0.02 2.52 16 Total: -1.00 -69.76 256.02 5.62 -64.13 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.11 Total: 15.60 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 3.86 Total: -12.39 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.33 Total: -74.40 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.05 Total: -38.24 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.76 5.62 -64.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335585527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.744 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds