Wall clock time and date at job start Sun Mar 29 2020 21:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37094 * 119.99868 * 2 1 4 4 H 1.07996 * 120.00019 * 205.14916 * 3 2 1 5 5 C 1.38956 * 120.00315 * 25.15223 * 3 2 1 6 6 N 1.31410 * 119.99824 * 11.74084 * 5 3 2 7 7 Si 1.86800 * 120.00206 * 191.74601 * 5 3 2 8 8 H 1.48500 * 109.46841 * 84.98518 * 7 5 3 9 9 H 1.48498 * 109.46854 * 204.98820 * 7 5 3 10 10 H 1.48496 * 109.46971 * 324.98763 * 7 5 3 11 11 C 1.34776 * 119.99682 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99637 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00502 * 0.02562 * 11 2 1 14 14 H 1.08996 * 115.54639 * 34.27227 * 13 11 2 15 15 C 1.53004 * 117.49821 * 248.60975 * 13 11 2 16 16 C 1.52999 * 117.50116 * 179.97438 * 13 11 2 17 17 H 1.08997 * 117.49643 * 359.97438 * 16 13 11 18 18 C 1.52997 * 117.49707 * 214.97816 * 16 13 11 19 19 C 1.53002 * 117.49822 * 128.74656 * 18 16 13 20 20 C 1.53001 * 117.49872 * 60.08792 * 18 16 13 21 21 H 1.09008 * 109.47048 * 265.05628 * 1 2 3 22 22 H 1.09003 * 109.46966 * 25.05458 * 1 2 3 23 23 H 1.08998 * 109.47375 * 145.05439 * 1 2 3 24 24 H 0.96996 * 120.00406 * 180.02562 * 6 5 3 25 25 H 1.09004 * 117.49777 * 359.97438 * 15 13 11 26 26 H 1.08994 * 117.49837 * 144.99354 * 15 13 11 27 27 H 1.09003 * 115.54826 * 274.41316 * 18 16 13 28 28 H 1.09002 * 117.49878 * 359.97438 * 19 18 16 29 29 H 1.09003 * 117.49967 * 145.02092 * 19 18 16 30 30 H 1.09002 * 117.49444 * 214.97560 * 20 18 16 31 31 H 1.08995 * 117.50056 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1536 1.2316 -0.3975 5 6 1.5545 2.3336 0.5115 6 7 0.4388 2.2430 1.1997 7 14 2.3394 4.0036 0.2205 8 1 1.9007 4.5342 -1.0953 9 1 1.9235 4.9399 1.2955 10 1 3.8177 3.8642 0.2301 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.4468 -2.4732 -0.5536 15 6 1.4604 -3.3313 1.2644 16 6 2.2075 -3.7627 0.0005 17 1 3.2933 -3.6676 0.0001 18 6 1.6492 -4.9560 -0.7775 19 6 2.5790 -5.6437 -1.7792 20 6 1.4217 -4.7758 -2.2797 21 1 -0.3633 -0.0886 1.0239 22 1 -0.3633 0.9310 -0.4352 23 1 -0.3634 -0.8423 -0.5886 24 1 0.0225 3.0431 1.5565 25 1 2.0551 -2.9527 2.0958 26 1 0.5712 -3.8974 1.5417 27 1 0.9434 -5.5834 -0.2331 28 1 3.5884 -5.2457 -1.8842 29 1 2.4846 -6.7235 -1.8942 30 1 0.5663 -5.2851 -2.7238 31 1 1.6693 -3.8072 -2.7137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335592549.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:33 Heat of formation + Delta-G solvation = 18.557694 kcal Electronic energy + Delta-G solvation = -13682.692105 eV Core-core repulsion = 11352.088197 eV Total energy + Delta-G solvation = -2330.603909 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.07083 -37.32706 -34.89344 -34.07935 -31.51337 -26.49631 -25.11170 -23.55617 -22.54863 -22.15954 -19.80868 -18.33008 -16.83715 -16.30405 -15.40387 -14.82707 -14.30908 -14.11643 -13.74841 -13.07991 -12.60166 -11.83780 -11.57123 -11.42545 -11.31309 -11.25421 -11.08062 -10.82369 -10.59788 -10.51132 -10.32579 -10.22642 -9.62456 -9.26452 -8.94888 -8.33378 -7.60492 -6.28646 -3.85501 3.18103 3.26599 3.32091 3.63236 3.93575 4.17198 4.45542 4.71166 5.03323 5.06492 5.16417 5.24018 5.48162 5.55507 5.68013 5.74967 5.80251 5.91383 6.02877 6.15903 6.27617 6.36441 6.45126 6.55879 6.72022 6.92290 7.25156 7.59483 8.19985 8.54124 9.23187 9.47591 10.05993 10.76326 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058474 B = 0.007438 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.726527 B = 3763.752997 C = 3884.313705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.443 5.443 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.475 3.525 12 O -0.591 6.591 13 C -0.161 4.161 14 H 0.111 0.889 15 C -0.150 4.150 16 C -0.104 4.104 17 H 0.114 0.886 18 C -0.120 4.120 19 C -0.178 4.178 20 C -0.179 4.179 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.026 0.974 24 H 0.267 0.733 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 -9.991 -3.084 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.161 5.161 3 C -0.434 4.434 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.263 3.737 12 O -0.477 6.477 13 C -0.182 4.182 14 H 0.129 0.871 15 C -0.188 4.188 16 C -0.123 4.123 17 H 0.132 0.868 18 C -0.138 4.138 19 C -0.215 4.215 20 C -0.216 4.216 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.250 -9.803 -2.989 10.493 hybrid contribution 0.003 0.947 -0.020 0.947 sum -2.247 -8.856 -3.009 9.620 Atomic orbital electron populations 1.21470 0.81262 0.99776 1.00438 1.43482 1.05478 1.04557 1.62601 1.19645 1.01011 0.84379 1.38394 0.88566 1.25360 0.96664 1.00143 0.95152 1.69990 1.19218 1.29678 1.33335 0.85937 0.79642 0.81231 0.77859 1.20312 1.20948 1.19428 1.19235 0.87356 0.83974 0.83158 1.90493 1.13984 1.87058 1.56139 1.22296 1.01322 0.91471 1.03133 0.87097 1.22919 1.02144 1.02119 0.91618 1.21738 0.98791 0.92388 0.99350 0.86769 1.21757 1.02325 0.98700 0.91029 1.22972 0.96060 0.98179 1.04291 1.22974 1.00019 1.01886 0.96698 0.93109 0.90839 0.95601 0.92280 0.88620 0.88787 0.87885 0.88686 0.89155 0.89147 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.64 8.45 59.85 0.51 3.15 16 2 N -0.44 -11.82 3.01 -122.19 -0.37 -12.19 16 3 C -0.31 -8.81 9.23 -14.93 -0.14 -8.95 16 4 H 0.10 2.89 7.46 -52.49 -0.39 2.50 16 5 C 0.03 0.81 5.06 -17.47 -0.09 0.72 16 6 N -0.88 -24.08 10.83 55.50 0.60 -23.48 16 7 Si 0.93 21.15 29.57 -169.99 -5.03 16.12 16 8 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 C 0.47 12.11 7.41 -10.99 -0.08 12.03 16 12 O -0.59 -17.08 15.98 5.54 0.09 -16.99 16 13 C -0.16 -3.14 4.95 -91.77 -0.45 -3.60 16 14 H 0.11 1.98 6.51 -51.93 -0.34 1.64 16 15 C -0.15 -2.53 9.96 -26.72 -0.27 -2.80 16 16 C -0.10 -1.77 5.38 -90.61 -0.49 -2.26 16 17 H 0.11 2.18 7.67 -51.93 -0.40 1.78 16 18 C -0.12 -1.62 5.87 -90.62 -0.53 -2.15 16 19 C -0.18 -2.17 10.25 -26.69 -0.27 -2.44 16 20 C -0.18 -2.29 10.18 -26.69 -0.27 -2.56 16 21 H 0.05 1.20 7.85 -51.92 -0.41 0.79 16 22 H 0.07 1.78 6.78 -51.93 -0.35 1.43 16 23 H 0.03 0.50 6.22 -51.93 -0.32 0.18 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 26 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 265.23 15.07 4.00 4.00 Total: -1.00 -31.17 265.23 -7.10 -38.26 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.30 Total: 3.14 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.09 Total: -8.86 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.23 Total: -35.67 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.09 Total: -16.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.17 -7.10 -38.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335592549.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.823 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds