Wall clock time and date at job start Sun Mar 29 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37094 * 119.99868 * 2 1 4 4 H 1.07996 * 120.00019 * 205.14916 * 3 2 1 5 5 C 1.38956 * 120.00315 * 25.15223 * 3 2 1 6 6 N 1.31410 * 119.99824 * 11.74084 * 5 3 2 7 7 Si 1.86800 * 120.00206 * 191.74601 * 5 3 2 8 8 H 1.48500 * 109.46841 * 84.98518 * 7 5 3 9 9 H 1.48498 * 109.46854 * 204.98820 * 7 5 3 10 10 H 1.48496 * 109.46971 * 324.98763 * 7 5 3 11 11 C 1.34776 * 119.99682 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99637 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00502 * 0.02562 * 11 2 1 14 14 H 1.08996 * 115.54639 * 34.27227 * 13 11 2 15 15 C 1.53004 * 117.49821 * 248.60975 * 13 11 2 16 16 C 1.52999 * 117.50116 * 179.97438 * 13 11 2 17 17 H 1.08997 * 117.49643 * 359.97438 * 16 13 11 18 18 C 1.52997 * 117.49707 * 214.97816 * 16 13 11 19 19 C 1.53002 * 117.49822 * 128.74656 * 18 16 13 20 20 C 1.53001 * 117.49872 * 60.08792 * 18 16 13 21 21 H 1.09008 * 109.47048 * 265.05628 * 1 2 3 22 22 H 1.09003 * 109.46966 * 25.05458 * 1 2 3 23 23 H 1.08998 * 109.47375 * 145.05439 * 1 2 3 24 24 H 0.96996 * 120.00406 * 180.02562 * 6 5 3 25 25 H 1.09004 * 117.49777 * 359.97438 * 15 13 11 26 26 H 1.08994 * 117.49837 * 144.99354 * 15 13 11 27 27 H 1.09003 * 115.54826 * 274.41316 * 18 16 13 28 28 H 1.09002 * 117.49878 * 359.97438 * 19 18 16 29 29 H 1.09003 * 117.49967 * 145.02092 * 19 18 16 30 30 H 1.09002 * 117.49444 * 214.97560 * 20 18 16 31 31 H 1.08995 * 117.50056 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1536 1.2316 -0.3975 5 6 1.5545 2.3336 0.5115 6 7 0.4388 2.2430 1.1997 7 14 2.3394 4.0036 0.2205 8 1 1.9007 4.5342 -1.0953 9 1 1.9235 4.9399 1.2955 10 1 3.8177 3.8642 0.2301 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.4468 -2.4732 -0.5536 15 6 1.4604 -3.3313 1.2644 16 6 2.2075 -3.7627 0.0005 17 1 3.2933 -3.6676 0.0001 18 6 1.6492 -4.9560 -0.7775 19 6 2.5790 -5.6437 -1.7792 20 6 1.4217 -4.7758 -2.2797 21 1 -0.3633 -0.0886 1.0239 22 1 -0.3633 0.9310 -0.4352 23 1 -0.3634 -0.8423 -0.5886 24 1 0.0225 3.0431 1.5565 25 1 2.0551 -2.9527 2.0958 26 1 0.5712 -3.8974 1.5417 27 1 0.9434 -5.5834 -0.2331 28 1 3.5884 -5.2457 -1.8842 29 1 2.4846 -6.7235 -1.8942 30 1 0.5663 -5.2851 -2.7238 31 1 1.6693 -3.8072 -2.7137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335592549.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:32 Heat of formation + Delta-G solvation = -0.079318 kcal Electronic energy + Delta-G solvation = -13683.500267 eV Core-core repulsion = 11352.088197 eV Total energy + Delta-G solvation = -2331.412070 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.79688 -38.77795 -36.73492 -35.63622 -33.61138 -28.48701 -26.97886 -25.05935 -24.04143 -23.17685 -21.13431 -20.04843 -18.91462 -18.10417 -16.78067 -16.52580 -16.06006 -15.83027 -15.34697 -14.83045 -13.99501 -13.76207 -13.35410 -13.15474 -13.08642 -12.66431 -12.47124 -12.40164 -12.23211 -12.16794 -11.77837 -11.67675 -11.03396 -10.87867 -10.52918 -10.32495 -9.68914 -8.36802 -6.03419 1.35415 1.38556 1.51044 1.87927 2.24840 2.68127 2.96659 3.12300 3.19104 3.74206 3.91139 3.98339 4.16485 4.20825 4.29768 4.44445 4.56229 4.70917 4.82762 4.83733 4.96197 5.06498 5.11671 5.28511 5.32935 5.34461 5.40715 5.41262 6.08357 6.46927 7.13634 7.44378 8.02340 8.66456 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058474 B = 0.007438 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.726527 B = 3763.752997 C = 3884.313705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.460 5.460 3 C -0.350 4.350 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.896 5.896 7 Si 0.992 3.008 8 H -0.263 1.263 9 H -0.270 1.270 10 H -0.278 1.278 11 C 0.461 3.539 12 O -0.640 6.640 13 C -0.177 4.177 14 H 0.134 0.866 15 C -0.133 4.133 16 C -0.094 4.094 17 H 0.083 0.917 18 C -0.124 4.124 19 C -0.172 4.172 20 C -0.179 4.179 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.275 0.725 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -11.151 -3.255 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.177 5.177 3 C -0.478 4.478 4 H 0.085 0.915 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.815 3.185 8 H -0.188 1.188 9 H -0.195 1.195 10 H -0.203 1.203 11 C 0.251 3.749 12 O -0.529 6.529 13 C -0.198 4.198 14 H 0.152 0.848 15 C -0.170 4.170 16 C -0.112 4.112 17 H 0.101 0.899 18 C -0.141 4.141 19 C -0.209 4.209 20 C -0.216 4.216 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.919 -10.969 -3.158 12.069 hybrid contribution 0.545 1.301 0.056 1.411 sum -3.374 -9.669 -3.103 10.700 Atomic orbital electron populations 1.21424 0.79286 1.00634 1.00493 1.43777 1.06843 1.04487 1.62620 1.19610 1.00862 0.86464 1.40834 0.91466 1.26142 0.97067 1.03070 0.94124 1.70055 1.19621 1.30996 1.32731 0.84979 0.78131 0.76737 0.78651 1.18793 1.19458 1.20279 1.20275 0.87279 0.85726 0.81594 1.90444 1.16349 1.88099 1.58012 1.22169 1.02136 0.89164 1.06316 0.84799 1.23057 1.03218 1.00579 0.90178 1.21732 0.97165 0.92419 0.99927 0.89867 1.21785 1.03483 0.97683 0.91186 1.23066 0.95122 0.99708 1.03004 1.23016 1.01280 1.01284 0.95989 0.93888 0.92409 0.91606 0.91560 0.90604 0.84507 0.84946 0.90215 0.86233 0.86428 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.72 8.45 127.77 1.08 6.80 16 2 N -0.46 -25.13 3.01 -658.87 -1.98 -27.12 16 3 C -0.35 -20.85 9.23 84.04 0.78 -20.07 16 4 H 0.07 4.29 7.46 -2.91 -0.02 4.27 16 5 C 0.00 -0.12 5.06 84.93 0.43 0.31 16 6 N -0.90 -48.74 10.83 21.66 0.23 -48.51 16 7 Si 0.99 43.56 29.57 68.60 2.03 45.59 16 8 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 C 0.46 24.23 7.41 87.66 0.65 24.87 16 12 O -0.64 -38.96 15.98 -3.08 -0.05 -39.01 16 13 C -0.18 -6.77 4.95 -11.54 -0.06 -6.83 16 14 H 0.13 4.45 6.51 -2.39 -0.02 4.43 16 15 C -0.13 -4.24 9.96 30.60 0.30 -3.93 16 16 C -0.09 -3.10 5.38 -10.79 -0.06 -3.15 16 17 H 0.08 3.28 7.67 -2.39 -0.02 3.26 16 18 C -0.12 -2.96 5.87 -10.79 -0.06 -3.03 16 19 C -0.17 -3.76 10.25 30.62 0.31 -3.44 16 20 C -0.18 -4.10 10.18 30.62 0.31 -3.79 16 21 H 0.04 2.01 7.85 -2.38 -0.02 1.99 16 22 H 0.06 2.79 6.78 -2.39 -0.02 2.78 16 23 H 0.07 2.44 6.22 -2.39 -0.01 2.42 16 24 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 25 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 26 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -70.23 265.23 5.03 -65.20 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.11 Total: 16.11 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 3.69 Total: -12.27 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.75 Total: -75.63 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.05 Total: -39.01 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.23 5.03 -65.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335592549.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.119 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds