Wall clock time and date at job start Sun Mar 29 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.63114 * 2 1 4 4 C 1.53005 * 109.63074 * 239.61250 * 2 1 3 5 5 C 1.50099 * 110.13506 * 190.32953 * 4 2 1 6 6 C 1.31687 * 123.77096 * 17.14680 * 5 4 2 7 7 C 1.46957 * 118.10819 * 179.60514 * 6 5 4 8 8 O 1.21651 * 120.00218 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99606 * 179.97438 * 7 6 5 10 10 C 1.36818 * 119.99940 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00032 * 0.02562 * 10 9 7 12 12 C 1.39072 * 119.99803 * 179.97438 * 10 9 7 13 13 N 1.31357 * 119.99954 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47056 * 89.99765 * 14 12 10 16 16 H 1.48500 * 109.47018 * 209.99741 * 14 12 10 17 17 H 1.48498 * 109.46740 * 329.99964 * 14 12 10 18 18 C 1.50093 * 123.77630 * 359.58398 * 6 5 4 19 19 C 1.53013 * 110.02430 * 17.25960 * 18 6 5 20 20 H 1.08991 * 109.47101 * 180.38734 * 1 2 3 21 21 H 1.09000 * 109.46643 * 300.39375 * 1 2 3 22 22 H 1.08998 * 109.47013 * 60.38464 * 1 2 3 23 23 H 1.08999 * 109.36253 * 70.12233 * 4 2 1 24 24 H 1.09002 * 109.36137 * 310.53351 * 4 2 1 25 25 H 1.08002 * 118.11539 * 197.16945 * 5 4 2 26 26 H 0.97000 * 120.00171 * 359.97438 * 9 7 6 27 27 H 0.96994 * 119.99856 * 180.02562 * 13 12 10 28 28 H 1.09002 * 109.36216 * 137.39613 * 18 6 5 29 29 H 1.08998 * 109.36150 * 257.12643 * 18 6 5 30 30 H 1.09002 * 109.62963 * 69.87210 * 19 18 6 31 31 H 1.08997 * 109.62964 * 190.46186 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0440 -0.7290 -1.2431 5 6 3.5235 -0.9575 -1.1333 6 6 4.1942 -0.8803 -0.0027 7 6 5.6408 -1.1366 -0.0369 8 8 6.1851 -1.4114 -1.0896 9 7 6.3644 -1.0673 1.0980 10 6 7.7112 -1.3065 1.0663 11 1 8.1945 -1.5504 0.1318 12 6 8.4579 -1.2344 2.2373 13 7 9.7510 -1.4635 2.2069 14 14 7.6222 -0.8117 3.8536 15 1 7.1651 -2.0600 4.5158 16 1 8.5835 -0.1055 4.7381 17 1 6.4535 0.0662 3.5917 18 6 3.5663 -0.5451 1.3187 19 6 2.0499 -0.7343 1.2413 20 1 -0.3633 -1.0276 0.0069 21 1 -0.3632 0.5199 0.8865 22 1 -0.3633 0.5078 -0.8934 23 1 1.8361 -0.1264 -2.1273 24 1 1.5360 -1.6890 -1.3351 25 1 4.0694 -1.1989 -2.0334 26 1 5.9304 -0.8478 1.9373 27 1 10.2717 -1.4136 3.0236 28 1 3.9734 -1.2004 2.0888 29 1 3.7886 0.4915 1.5718 30 1 1.8168 -1.7964 1.1654 31 1 1.5828 -0.3168 2.1333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336204796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:12 Heat of formation + Delta-G solvation = -44.121271 kcal Electronic energy + Delta-G solvation = -13661.313481 eV Core-core repulsion = 11327.991609 eV Total energy + Delta-G solvation = -2333.321873 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.25839 -37.42024 -34.09867 -32.52348 -31.64784 -30.44807 -27.08282 -24.75586 -22.91352 -21.32701 -19.81395 -18.74863 -17.25489 -16.25557 -15.07294 -14.41565 -14.26818 -14.02656 -13.68243 -13.26234 -13.02391 -12.77240 -12.52001 -12.26298 -11.95794 -11.80181 -11.52491 -11.23912 -10.68298 -10.60798 -10.46524 -10.05144 -9.96816 -9.62953 -8.50756 -8.49966 -8.20194 -6.36581 -3.82281 2.12183 3.02446 3.05919 3.12742 4.06755 4.24896 4.63408 4.75753 4.82249 5.02241 5.25716 5.30640 5.45544 5.55493 5.59847 5.70612 5.73010 5.76593 5.91237 6.00847 6.06394 6.08494 6.17516 6.36912 6.46289 6.95167 7.18132 7.57753 8.15136 8.58622 8.92674 9.40724 9.86213 10.76172 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.008480 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.344802 B = 3300.908341 C = 3844.151337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.147 4.147 7 C 0.474 3.526 8 O -0.586 6.586 9 N -0.577 5.577 10 C -0.303 4.303 11 H 0.121 0.879 12 C 0.042 3.958 13 N -0.874 5.874 14 Si 0.876 3.124 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.267 1.267 18 C -0.089 4.089 19 C -0.111 4.111 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.372 0.628 27 H 0.275 0.725 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.263 3.152 0.982 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.119 4.119 5 C -0.135 4.135 6 C -0.150 4.150 7 C 0.263 3.737 8 O -0.471 6.471 9 N -0.214 5.214 10 C -0.432 4.432 11 H 0.139 0.861 12 C -0.162 4.162 13 N -0.514 5.514 14 Si 0.702 3.298 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.193 1.193 18 C -0.126 4.126 19 C -0.148 4.148 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.138 0.862 26 H 0.206 0.794 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.640 2.949 0.429 16.905 hybrid contribution -0.307 0.318 1.390 1.459 sum -16.947 3.267 1.819 17.355 Atomic orbital electron populations 1.21816 0.95260 1.01685 1.01468 1.21221 0.95102 0.99908 0.95225 0.90893 1.20533 0.93021 1.00479 0.97872 1.22597 0.95012 0.97664 0.98180 1.20927 0.94478 1.04134 0.95480 1.17919 0.86439 0.84895 0.84487 1.90629 1.72261 1.54014 1.30212 1.42201 1.09028 1.61948 1.08234 1.19510 0.81248 1.44132 0.98292 0.86121 1.25096 0.95450 0.97535 0.98123 1.69598 1.05355 1.47439 1.28971 0.86707 0.79767 0.79330 0.83967 1.19372 1.19910 1.19268 1.20445 0.95146 1.01835 0.95174 1.21623 0.94929 1.00751 0.97523 0.92723 0.92795 0.92771 0.90992 0.90716 0.86177 0.79407 0.91450 0.91060 0.90712 0.91611 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.20 37.16 0.34 -0.94 16 2 C -0.10 -1.08 2.76 -90.46 -0.25 -1.33 16 3 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 4 C -0.08 -1.01 5.42 -28.17 -0.15 -1.17 16 5 C -0.11 -1.93 9.42 -36.47 -0.34 -2.27 16 6 C -0.15 -2.78 5.79 -103.26 -0.60 -3.38 16 7 C 0.47 11.71 7.66 -12.73 -0.10 11.61 16 8 O -0.59 -16.81 15.53 5.23 0.08 -16.73 16 9 N -0.58 -14.54 5.01 -12.10 -0.06 -14.60 16 10 C -0.30 -8.82 10.16 -15.02 -0.15 -8.97 16 11 H 0.12 3.99 7.38 -52.49 -0.39 3.60 16 12 C 0.04 1.16 5.50 -17.45 -0.10 1.07 16 13 N -0.87 -25.68 13.95 55.50 0.77 -24.90 16 14 Si 0.88 19.57 27.74 -169.99 -4.72 14.86 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 18 C -0.09 -1.36 5.02 -28.17 -0.14 -1.50 16 19 C -0.11 -1.33 5.29 -26.56 -0.14 -1.47 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 25 H 0.12 2.25 7.17 -52.49 -0.38 1.87 16 26 H 0.37 8.27 3.96 -40.82 -0.16 8.11 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.07 1.09 7.20 -51.93 -0.37 0.72 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 256.41 15.07 3.86 3.86 Total: -1.00 -32.18 256.41 -5.95 -38.13 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.27 Total: 7.73 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.63 Total: -8.35 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.71 Total: -39.50 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.08 Total: -16.73 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.72 Total: 14.86 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.18 -5.95 -38.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336204796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.992 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds