Wall clock time and date at job start Sun Mar 29 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.63114 * 2 1 4 4 C 1.53005 * 109.63074 * 239.61250 * 2 1 3 5 5 C 1.50099 * 110.13506 * 190.32953 * 4 2 1 6 6 C 1.31687 * 123.77096 * 17.14680 * 5 4 2 7 7 C 1.46957 * 118.10819 * 179.60514 * 6 5 4 8 8 O 1.21651 * 120.00218 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99606 * 179.97438 * 7 6 5 10 10 C 1.36818 * 119.99940 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00032 * 0.02562 * 10 9 7 12 12 C 1.39072 * 119.99803 * 179.97438 * 10 9 7 13 13 N 1.31357 * 119.99954 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47056 * 89.99765 * 14 12 10 16 16 H 1.48500 * 109.47018 * 209.99741 * 14 12 10 17 17 H 1.48498 * 109.46740 * 329.99964 * 14 12 10 18 18 C 1.50093 * 123.77630 * 359.58398 * 6 5 4 19 19 C 1.53013 * 110.02430 * 17.25960 * 18 6 5 20 20 H 1.08991 * 109.47101 * 180.38734 * 1 2 3 21 21 H 1.09000 * 109.46643 * 300.39375 * 1 2 3 22 22 H 1.08998 * 109.47013 * 60.38464 * 1 2 3 23 23 H 1.08999 * 109.36253 * 70.12233 * 4 2 1 24 24 H 1.09002 * 109.36137 * 310.53351 * 4 2 1 25 25 H 1.08002 * 118.11539 * 197.16945 * 5 4 2 26 26 H 0.97000 * 120.00171 * 359.97438 * 9 7 6 27 27 H 0.96994 * 119.99856 * 180.02562 * 13 12 10 28 28 H 1.09002 * 109.36216 * 137.39613 * 18 6 5 29 29 H 1.08998 * 109.36150 * 257.12643 * 18 6 5 30 30 H 1.09002 * 109.62963 * 69.87210 * 19 18 6 31 31 H 1.08997 * 109.62964 * 190.46186 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0440 -0.7290 -1.2431 5 6 3.5235 -0.9575 -1.1333 6 6 4.1942 -0.8803 -0.0027 7 6 5.6408 -1.1366 -0.0369 8 8 6.1851 -1.4114 -1.0896 9 7 6.3644 -1.0673 1.0980 10 6 7.7112 -1.3065 1.0663 11 1 8.1945 -1.5504 0.1318 12 6 8.4579 -1.2344 2.2373 13 7 9.7510 -1.4635 2.2069 14 14 7.6222 -0.8117 3.8536 15 1 7.1651 -2.0600 4.5158 16 1 8.5835 -0.1055 4.7381 17 1 6.4535 0.0662 3.5917 18 6 3.5663 -0.5451 1.3187 19 6 2.0499 -0.7343 1.2413 20 1 -0.3633 -1.0276 0.0069 21 1 -0.3632 0.5199 0.8865 22 1 -0.3633 0.5078 -0.8934 23 1 1.8361 -0.1264 -2.1273 24 1 1.5360 -1.6890 -1.3351 25 1 4.0694 -1.1989 -2.0334 26 1 5.9304 -0.8478 1.9373 27 1 10.2717 -1.4136 3.0236 28 1 3.9734 -1.2004 2.0888 29 1 3.7886 0.4915 1.5718 30 1 1.8168 -1.7964 1.1654 31 1 1.5828 -0.3168 2.1333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336204796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:12 Heat of formation + Delta-G solvation = -66.240099 kcal Electronic energy + Delta-G solvation = -13662.272626 eV Core-core repulsion = 11327.991609 eV Total energy + Delta-G solvation = -2334.281017 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89041 -38.87356 -36.20587 -34.07832 -33.39759 -31.62305 -28.34851 -26.56542 -24.00664 -22.72883 -21.32561 -20.70866 -18.65092 -17.98108 -17.04372 -15.84093 -15.79420 -15.27135 -15.06028 -14.92839 -14.57470 -14.16775 -13.90163 -13.53300 -13.16703 -13.05792 -12.81471 -12.50369 -12.37781 -12.06260 -11.63470 -11.59374 -11.37341 -11.09461 -10.49496 -10.35149 -9.90405 -8.50807 -6.09005 0.58265 1.24814 1.33439 1.39318 2.16108 2.35264 2.90622 3.16019 3.75419 3.82758 3.98533 4.17942 4.33131 4.42724 4.62277 4.66320 4.81424 4.90992 4.99245 5.04365 5.07572 5.16245 5.28644 5.40281 5.44058 5.60317 5.63620 5.79346 5.94582 6.51048 6.77504 7.29244 7.86032 8.66576 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.008480 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.344802 B = 3300.908341 C = 3844.151337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.080 4.080 5 C -0.087 4.087 6 C -0.170 4.170 7 C 0.468 3.532 8 O -0.639 6.639 9 N -0.575 5.575 10 C -0.337 4.337 11 H 0.056 0.944 12 C -0.010 4.010 13 N -0.924 5.924 14 Si 0.958 3.042 15 H -0.251 1.251 16 H -0.265 1.265 17 H -0.234 1.234 18 C -0.088 4.088 19 C -0.106 4.106 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.390 0.610 27 H 0.283 0.717 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.143 4.165 3.095 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.173 4.173 7 C 0.259 3.741 8 O -0.528 6.528 9 N -0.213 5.213 10 C -0.466 4.466 11 H 0.074 0.926 12 C -0.210 4.210 13 N -0.563 5.563 14 Si 0.777 3.223 15 H -0.175 1.175 16 H -0.190 1.190 17 H -0.157 1.157 18 C -0.125 4.125 19 C -0.143 4.143 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.227 0.773 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.543 3.967 2.540 21.076 hybrid contribution 0.935 -0.044 0.505 1.063 sum -19.608 3.923 3.046 20.228 Atomic orbital electron populations 1.21763 0.92933 1.02461 1.02498 1.21232 0.96909 0.99299 0.93863 0.91171 1.20675 0.89061 1.02164 0.99757 1.22954 0.97753 0.93756 0.96313 1.20837 0.90764 1.07231 0.98497 1.19091 0.88992 0.82644 0.83416 1.90589 1.74165 1.55903 1.32165 1.41972 1.07525 1.62515 1.09323 1.19081 0.83400 1.47313 0.96849 0.92585 1.26171 0.95984 0.96087 1.02734 1.69762 1.07539 1.48075 1.30937 0.85465 0.79651 0.80309 0.76868 1.17528 1.18985 1.15707 1.20513 0.97444 1.02113 0.92404 1.21643 0.92196 1.01361 0.99103 0.92075 0.91708 0.91935 0.89036 0.88670 0.88935 0.77309 0.90713 0.91210 0.89969 0.91301 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.20 71.98 0.66 -1.10 16 2 C -0.09 -1.71 2.76 -10.69 -0.03 -1.74 16 3 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 4 C -0.08 -1.70 5.42 29.66 0.16 -1.53 16 5 C -0.09 -2.86 9.42 24.82 0.23 -2.62 16 6 C -0.17 -6.33 5.79 -18.45 -0.11 -6.44 16 7 C 0.47 23.96 7.66 86.53 0.66 24.62 16 8 O -0.64 -39.14 15.53 -4.19 -0.07 -39.21 16 9 N -0.57 -29.64 5.01 -310.42 -1.56 -31.20 16 10 C -0.34 -20.76 10.16 84.12 0.85 -19.91 16 11 H 0.06 4.07 7.38 -2.91 -0.02 4.05 16 12 C -0.01 -0.56 5.50 84.96 0.47 -0.09 16 13 N -0.92 -56.31 13.95 21.69 0.30 -56.01 16 14 Si 0.96 39.48 27.74 68.60 1.90 41.38 16 15 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 16 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 17 H -0.23 -8.29 6.52 99.48 0.65 -7.64 16 18 C -0.09 -2.43 5.02 29.66 0.15 -2.28 16 19 C -0.11 -2.08 5.29 30.70 0.16 -1.92 16 20 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 21 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.10 1.75 8.11 -2.39 -0.02 1.73 16 25 H 0.09 3.54 7.17 -2.91 -0.02 3.52 16 26 H 0.39 16.91 3.96 -92.71 -0.37 16.54 16 27 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.07 1.94 7.20 -2.39 -0.02 1.92 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.61 256.41 4.49 -72.11 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.69 Total: 25.93 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 3.22 Total: -13.01 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -1.25 Total: -87.21 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.07 Total: -39.21 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -76.61 4.49 -72.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336204796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.875 kcal (2) G-P(sol) polarization free energy of solvation -76.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds