Wall clock time and date at job start Sun Mar 29 2020 21:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 115.56452 * 2 1 4 4 C 1.53003 * 117.49801 * 145.69100 * 2 1 3 5 5 C 1.53000 * 60.03267 * 107.49982 * 4 2 1 6 6 H 1.09003 * 117.49787 * 252.49519 * 5 4 2 7 7 C 1.50694 * 117.50091 * 107.48165 * 5 4 2 8 8 O 1.21300 * 119.99573 * 291.39097 * 7 5 4 9 9 N 1.34775 * 120.00410 * 111.38945 * 7 5 4 10 10 C 1.37101 * 119.99892 * 180.02562 * 9 7 5 11 11 H 1.07996 * 119.99883 * 222.65520 * 10 9 7 12 12 C 1.38946 * 119.99875 * 42.65999 * 10 9 7 13 13 N 1.31411 * 120.00592 * 19.20009 * 12 10 9 14 14 Si 1.86802 * 119.99616 * 199.19576 * 12 10 9 15 15 H 1.48503 * 109.47490 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47098 * 120.00095 * 14 12 10 17 17 H 1.48501 * 109.47206 * 239.99785 * 14 12 10 18 18 C 1.46497 * 120.00120 * 0.02562 * 9 7 5 19 19 C 1.52999 * 117.50214 * 183.37793 * 18 9 7 20 20 C 1.52993 * 117.49873 * 114.71153 * 18 9 7 21 21 H 1.08998 * 109.46916 * 325.70477 * 1 2 3 22 22 H 1.09000 * 109.46564 * 85.70002 * 1 2 3 23 23 H 1.08998 * 109.47319 * 205.70335 * 1 2 3 24 24 H 1.09004 * 117.49952 * 359.97438 * 4 2 1 25 25 H 1.08999 * 117.49842 * 215.00327 * 4 2 1 26 26 H 0.97000 * 120.00201 * 174.83591 * 13 12 10 27 27 H 1.09007 * 115.54469 * 329.04397 * 18 9 7 28 28 H 1.08994 * 117.49587 * 359.97438 * 19 18 9 29 29 H 1.08996 * 117.49976 * 145.02226 * 19 18 9 30 30 H 1.09004 * 117.50130 * 214.97779 * 20 18 9 31 31 H 1.09001 * 117.50229 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2372 -1.1216 -0.7650 6 1 1.6124 -1.8595 -1.2683 7 6 3.5301 -0.7817 -1.4604 8 8 3.9725 0.3462 -1.4008 9 7 4.1950 -1.7308 -2.1485 10 6 5.3716 -1.4216 -2.7807 11 1 5.5641 -1.7946 -3.7758 12 6 6.3163 -0.6285 -2.1411 13 7 6.2786 -0.4854 -0.8354 14 14 7.6402 0.2342 -3.1375 15 1 7.4643 -0.0862 -4.5768 16 1 7.5303 1.7020 -2.9406 17 1 8.9780 -0.2269 -2.6871 18 6 3.6605 -3.0929 -2.2210 19 6 4.5005 -4.1436 -2.9499 20 6 3.2193 -3.6065 -3.5929 21 1 -0.3633 0.8490 0.5790 22 1 -0.3632 0.0771 -1.0248 23 1 -0.3634 -0.9259 0.4457 24 1 1.6112 -1.8583 1.2686 25 1 3.1713 -0.8751 1.2686 26 1 6.9806 0.0061 -0.3809 27 1 3.0878 -3.4199 -1.3530 28 1 5.4505 -3.8214 -3.3759 29 1 4.4800 -5.1620 -2.5619 30 1 2.3566 -4.2720 -3.6277 31 1 3.3263 -2.9310 -4.4416 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378684150.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:46 Heat of formation + Delta-G solvation = 24.604884 kcal Electronic energy + Delta-G solvation = -14118.950746 eV Core-core repulsion = 11788.609063 eV Total energy + Delta-G solvation = -2330.341683 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.83365 -36.79597 -35.33305 -32.65597 -30.81530 -28.31078 -25.42629 -22.69313 -21.62522 -20.97837 -20.28747 -18.67982 -16.66693 -15.99374 -14.80165 -14.55346 -13.99936 -13.62822 -13.30948 -12.82757 -12.80730 -12.27397 -11.91931 -11.29980 -11.00059 -10.95632 -10.86677 -10.80754 -10.60733 -10.15383 -9.93457 -9.69703 -9.57900 -9.32330 -8.67440 -7.93114 -6.96840 -6.06566 -3.79972 3.31682 3.41696 3.43637 3.91043 4.27559 4.53925 4.82413 4.92131 5.25181 5.42424 5.45146 5.58694 5.65286 5.78348 5.83966 5.87495 6.08044 6.10378 6.19250 6.25390 6.29049 6.35651 6.52512 6.70544 6.81524 6.88529 6.96664 7.66281 8.32271 9.12287 9.24257 9.73298 10.39241 11.02678 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.012988 C = 0.009780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.341360 B = 2155.361851 C = 2862.439911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.136 4.136 3 H 0.111 0.889 4 C -0.156 4.156 5 C -0.169 4.169 6 H 0.105 0.895 7 C 0.509 3.491 8 O -0.533 6.533 9 N -0.427 5.427 10 C -0.349 4.349 11 H 0.078 0.922 12 C 0.072 3.928 13 N -0.832 5.832 14 Si 0.911 3.089 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.286 1.286 18 C 0.080 3.920 19 C -0.176 4.176 20 C -0.209 4.209 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.262 0.738 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 -4.592 0.360 8.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.155 4.155 3 H 0.129 0.871 4 C -0.194 4.194 5 C -0.191 4.191 6 H 0.123 0.877 7 C 0.297 3.703 8 O -0.411 6.411 9 N -0.147 5.147 10 C -0.476 4.476 11 H 0.095 0.905 12 C -0.138 4.138 13 N -0.465 5.465 14 Si 0.738 3.262 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.212 1.212 18 C -0.027 4.027 19 C -0.213 4.213 20 C -0.249 4.249 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.364 -3.840 0.549 8.323 hybrid contribution 0.726 0.163 -0.397 0.844 sum -6.637 -3.677 0.152 7.589 Atomic orbital electron populations 1.21344 0.93392 1.01244 1.01457 1.22248 0.93964 0.95572 1.03725 0.87077 1.22960 1.02567 1.00903 0.92961 1.22425 0.99428 1.02558 0.94681 0.87740 1.18921 0.83680 0.85144 0.82568 1.90510 1.67932 1.21153 1.61507 1.42697 1.19995 1.03684 1.48312 1.18894 0.94492 1.35284 0.98889 0.90477 1.25213 0.96999 0.96822 0.94761 1.69847 1.31704 1.37156 1.07805 0.86172 0.79933 0.79986 0.80074 1.19602 1.20692 1.21231 1.21635 1.00944 0.86543 0.93541 1.23079 0.96453 0.97175 1.04617 1.23327 0.97977 1.04409 0.99140 0.92483 0.92472 0.92956 0.89336 0.88417 0.92755 0.87930 0.87554 0.89843 0.89869 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 10.19 37.16 0.38 -1.23 16 2 C -0.14 -2.48 5.92 -90.58 -0.54 -3.02 16 3 H 0.11 2.29 7.67 -51.93 -0.40 1.89 16 4 C -0.16 -2.85 9.88 -26.73 -0.26 -3.12 16 5 C -0.17 -3.46 4.68 -91.74 -0.43 -3.89 16 6 H 0.10 1.89 7.31 -51.93 -0.38 1.51 16 7 C 0.51 13.44 6.75 -10.99 -0.07 13.36 16 8 O -0.53 -16.25 13.90 5.54 0.08 -16.18 16 9 N -0.43 -11.06 2.85 -107.74 -0.31 -11.36 16 10 C -0.35 -9.78 7.99 -14.93 -0.12 -9.90 16 11 H 0.08 2.09 7.19 -52.49 -0.38 1.72 16 12 C 0.07 2.09 4.35 -17.47 -0.08 2.01 16 13 N -0.83 -25.17 11.66 55.50 0.65 -24.52 16 14 Si 0.91 22.38 29.60 -169.99 -5.03 17.35 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.08 1.65 5.62 -67.94 -0.38 1.27 16 19 C -0.18 -3.26 9.80 -26.69 -0.26 -3.52 16 20 C -0.21 -3.69 10.36 -26.69 -0.28 -3.97 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 24 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 25 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 26 H 0.26 7.58 8.32 -40.82 -0.34 7.24 16 27 H 0.10 1.94 7.11 -51.92 -0.37 1.57 16 28 H 0.11 2.18 6.69 -51.93 -0.35 1.83 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 263.94 15.07 3.98 3.98 Total: -1.00 -32.75 263.94 -7.05 -39.79 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.37 Total: 2.93 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.04 Total: -11.99 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.34 Total: -35.88 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.08 Total: -16.18 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.75 -7.05 -39.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378684150.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.398 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds