Wall clock time and date at job start Sun Mar 29 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46988 * 180.08971 * 3 2 1 5 5 C 1.36936 * 120.00023 * 90.48141 * 4 3 2 6 6 H 1.08001 * 119.99776 * 325.96471 * 5 4 3 7 7 C 1.38814 * 120.00083 * 145.96937 * 5 4 3 8 8 N 1.31620 * 119.99800 * 154.94852 * 7 5 4 9 9 Si 1.86795 * 119.99890 * 334.95397 * 7 5 4 10 10 H 1.48504 * 109.47205 * 95.30104 * 9 7 5 11 11 H 1.48500 * 109.47065 * 215.30346 * 9 7 5 12 12 H 1.48504 * 109.47207 * 335.30112 * 9 7 5 13 13 C 1.46505 * 120.00119 * 270.48531 * 4 3 2 14 14 C 1.53000 * 109.47438 * 89.99617 * 13 4 3 15 15 C 1.53001 * 112.99649 * 50.33695 * 14 13 4 16 16 C 1.54034 * 113.81596 * 278.50959 * 14 13 4 17 17 O 1.44451 * 85.42449 * 223.23567 * 16 14 13 18 18 C 1.44182 * 93.37516 * 24.08897 * 17 16 14 19 19 H 4.40639 * 5.51487 * 180.02562 * 4 1 2 20 20 H 1.09003 * 109.47003 * 300.08973 * 3 2 1 21 21 H 1.09003 * 109.47104 * 60.08953 * 3 2 1 22 22 H 0.97004 * 119.99321 * 179.97438 * 8 7 5 23 23 H 1.09000 * 109.47141 * 210.00303 * 13 4 3 24 24 H 1.09006 * 109.46562 * 329.99488 * 13 4 3 25 25 H 1.08991 * 109.47465 * 59.99777 * 15 14 13 26 26 H 1.09000 * 109.46914 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.47173 * 299.99448 * 15 14 13 28 28 H 1.09004 * 113.86502 * 337.34124 * 16 14 13 29 29 H 1.08996 * 113.86509 * 109.04760 * 16 14 13 30 30 H 1.08997 * 113.86232 * 221.76543 * 18 17 16 31 31 H 1.08999 * 113.97958 * 90.07781 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3821 0.0022 5 6 3.3710 2.0225 1.1890 6 1 2.7506 1.8147 2.0483 7 6 4.4090 2.9390 1.2878 8 7 4.3615 3.8918 2.1945 9 14 5.8729 2.8199 0.1337 10 1 5.6647 3.7252 -1.0250 11 1 7.1072 3.2178 0.8571 12 1 6.0107 1.4222 -0.3487 13 6 3.3674 2.0784 -1.2655 14 6 2.0886 2.8009 -1.6939 15 6 1.4880 3.6631 -0.5818 16 6 1.0646 1.8893 -2.3959 17 8 0.9013 2.9830 -3.3253 18 6 2.2078 3.5261 -3.0475 19 1 -1.0502 -0.0004 0.0002 20 1 3.0096 -0.5144 0.8892 21 1 3.0096 -0.5116 -0.8908 22 1 5.0870 4.5320 2.2637 23 1 4.1701 2.8048 -1.1383 24 1 3.6499 1.3551 -2.0305 25 1 2.2107 4.4207 -0.2790 26 1 0.5833 4.1489 -0.9472 27 1 1.2419 3.0335 0.2733 28 1 1.5018 0.9949 -2.8399 29 1 0.1773 1.6805 -1.7982 30 1 2.2252 4.6128 -2.9656 31 1 2.9962 3.1341 -3.6900 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379355167.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:21 Heat of formation + Delta-G solvation = 72.474811 kcal Electronic energy + Delta-G solvation = -14494.121172 eV Core-core repulsion = 12165.855285 eV Total energy + Delta-G solvation = -2328.265887 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.12431 -36.29964 -32.73352 -31.79681 -30.69913 -26.73999 -26.40899 -26.07052 -24.52061 -21.60425 -18.44416 -17.60014 -16.82991 -15.91682 -15.42441 -15.04947 -14.80380 -14.22157 -13.55608 -13.12968 -12.83751 -12.46154 -12.10762 -11.65667 -11.57734 -11.27571 -10.81938 -10.71180 -10.43708 -9.94528 -9.84710 -9.62529 -9.49413 -9.35769 -9.12443 -8.53916 -7.05315 -6.06853 -3.44753 3.24321 3.41806 3.44549 3.46271 3.52066 4.20731 4.45865 4.73109 5.06730 5.20253 5.32164 5.45935 5.66431 5.72072 5.83305 6.02019 6.14850 6.20845 6.41376 6.44588 6.50302 6.56408 6.63181 6.69505 6.81207 6.89865 7.36142 7.93009 8.27291 8.31334 8.87533 9.63094 9.98828 11.08215 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.015453 C = 0.012323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.527521 B = 1811.457281 C = 2271.675517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.161 4.161 3 C 0.238 3.762 4 N -0.592 5.592 5 C -0.268 4.268 6 H 0.080 0.920 7 C 0.042 3.958 8 N -0.891 5.891 9 Si 0.870 3.130 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.269 1.269 13 C 0.141 3.859 14 C -0.132 4.132 15 C -0.103 4.103 16 C 0.045 3.955 17 O -0.391 6.391 18 C 0.033 3.967 19 H 0.203 0.797 20 H 0.083 0.917 21 H 0.062 0.938 22 H 0.264 0.736 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -4.235 -7.545 9.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.164 4.164 3 C 0.112 3.888 4 N -0.312 5.312 5 C -0.396 4.396 6 H 0.098 0.902 7 C -0.159 4.159 8 N -0.531 5.531 9 Si 0.700 3.300 10 H -0.214 1.214 11 H -0.229 1.229 12 H -0.194 1.194 13 C 0.015 3.985 14 C -0.134 4.134 15 C -0.160 4.160 16 C -0.031 4.031 17 O -0.310 6.310 18 C -0.045 4.045 19 H 0.220 0.780 20 H 0.101 0.899 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.227 -4.012 -7.593 9.174 hybrid contribution 0.754 0.081 -0.519 0.919 sum -2.472 -3.931 -8.112 9.347 Atomic orbital electron populations 1.24658 0.95729 1.03006 1.04071 1.25047 0.96087 0.97719 0.97551 1.18029 0.82482 0.87438 1.00813 1.44029 1.76257 1.08517 1.02415 1.18675 1.11102 1.20541 0.89313 0.90196 1.25288 0.97540 0.96665 0.96417 1.69907 1.32454 1.14096 1.36682 0.87084 0.84072 0.78569 0.80293 1.21351 1.22934 1.19417 1.21339 0.94569 0.94899 0.87700 1.24100 0.98188 0.95934 0.95200 1.21293 0.98494 0.99055 0.97181 1.24190 0.99615 0.90237 0.89067 1.89593 1.33016 1.42276 1.66065 1.24058 0.85508 0.99612 0.95312 0.77983 0.89929 0.92015 0.92641 0.92097 0.93839 0.92148 0.94810 0.90107 0.91383 0.89295 0.89764 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.23 17.64 29.55 0.52 -3.71 16 2 C -0.16 -2.94 11.98 -37.12 -0.44 -3.38 16 3 C 0.24 4.47 6.19 -6.83 -0.04 4.42 16 4 N -0.59 -13.06 1.73 -176.56 -0.31 -13.37 16 5 C -0.27 -6.98 8.04 -15.06 -0.12 -7.10 16 6 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 7 C 0.04 1.14 5.28 -17.43 -0.09 1.04 16 8 N -0.89 -25.83 13.97 55.49 0.78 -25.06 16 9 Si 0.87 21.01 25.08 -169.99 -4.26 16.74 16 10 H -0.29 -6.70 6.62 56.52 0.37 -6.33 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 13 C 0.14 2.90 4.14 -4.04 -0.02 2.88 16 14 C -0.13 -2.53 1.20 -153.43 -0.18 -2.71 16 15 C -0.10 -2.16 8.21 37.16 0.31 -1.85 16 16 C 0.05 0.80 6.80 37.64 0.26 1.06 16 17 O -0.39 -7.27 12.38 -35.23 -0.44 -7.71 16 18 C 0.03 0.56 8.37 37.64 0.31 0.88 16 19 H 0.20 2.66 7.80 -54.08 -0.42 2.23 16 20 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 21 H 0.06 1.01 7.90 -51.93 -0.41 0.60 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.06 1.38 3.00 -51.93 -0.16 1.22 16 24 H 0.04 0.80 7.74 -51.93 -0.40 0.40 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.03 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 28 H 0.07 1.12 7.99 -51.93 -0.41 0.71 16 29 H 0.09 1.58 6.24 -51.93 -0.32 1.26 16 30 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 256.10 15.07 3.86 3.86 Total: -1.00 -28.61 256.10 -4.04 -32.65 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.17 Total: 1.34 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 0.50 Total: -8.46 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.47 Total: -38.42 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.44 Total: -7.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.26 Total: 16.74 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.61 -4.04 -32.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379355167.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.126 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds