Wall clock time and date at job start Sun Mar 29 2020 21:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46988 * 180.08971 * 3 2 1 5 5 C 1.36936 * 120.00023 * 90.48141 * 4 3 2 6 6 H 1.08001 * 119.99776 * 325.96471 * 5 4 3 7 7 C 1.38814 * 120.00083 * 145.96937 * 5 4 3 8 8 N 1.31620 * 119.99800 * 154.94852 * 7 5 4 9 9 Si 1.86795 * 119.99890 * 334.95397 * 7 5 4 10 10 H 1.48504 * 109.47205 * 95.30104 * 9 7 5 11 11 H 1.48500 * 109.47065 * 215.30346 * 9 7 5 12 12 H 1.48504 * 109.47207 * 335.30112 * 9 7 5 13 13 C 1.46505 * 120.00119 * 270.48531 * 4 3 2 14 14 C 1.53000 * 109.47438 * 89.99617 * 13 4 3 15 15 C 1.53001 * 112.99649 * 50.33695 * 14 13 4 16 16 C 1.54034 * 113.81596 * 278.50959 * 14 13 4 17 17 O 1.44451 * 85.42449 * 223.23567 * 16 14 13 18 18 C 1.44182 * 93.37516 * 24.08897 * 17 16 14 19 19 H 4.40639 * 5.51487 * 180.02562 * 4 1 2 20 20 H 1.09003 * 109.47003 * 300.08973 * 3 2 1 21 21 H 1.09003 * 109.47104 * 60.08953 * 3 2 1 22 22 H 0.97004 * 119.99321 * 179.97438 * 8 7 5 23 23 H 1.09000 * 109.47141 * 210.00303 * 13 4 3 24 24 H 1.09006 * 109.46562 * 329.99488 * 13 4 3 25 25 H 1.08991 * 109.47465 * 59.99777 * 15 14 13 26 26 H 1.09000 * 109.46914 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.47173 * 299.99448 * 15 14 13 28 28 H 1.09004 * 113.86502 * 337.34124 * 16 14 13 29 29 H 1.08996 * 113.86509 * 109.04760 * 16 14 13 30 30 H 1.08997 * 113.86232 * 221.76543 * 18 17 16 31 31 H 1.08999 * 113.97958 * 90.07781 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3821 0.0022 5 6 3.3710 2.0225 1.1890 6 1 2.7506 1.8147 2.0483 7 6 4.4090 2.9390 1.2878 8 7 4.3615 3.8918 2.1945 9 14 5.8729 2.8199 0.1337 10 1 5.6647 3.7252 -1.0250 11 1 7.1072 3.2178 0.8571 12 1 6.0107 1.4222 -0.3487 13 6 3.3674 2.0784 -1.2655 14 6 2.0886 2.8009 -1.6939 15 6 1.4880 3.6631 -0.5818 16 6 1.0646 1.8893 -2.3959 17 8 0.9013 2.9830 -3.3253 18 6 2.2078 3.5261 -3.0475 19 1 -1.0502 -0.0004 0.0002 20 1 3.0096 -0.5144 0.8892 21 1 3.0096 -0.5116 -0.8908 22 1 5.0870 4.5320 2.2637 23 1 4.1701 2.8048 -1.1383 24 1 3.6499 1.3551 -2.0305 25 1 2.2107 4.4207 -0.2790 26 1 0.5833 4.1489 -0.9472 27 1 1.2419 3.0335 0.2733 28 1 1.5018 0.9949 -2.8399 29 1 0.1773 1.6805 -1.7982 30 1 2.2252 4.6128 -2.9656 31 1 2.9962 3.1341 -3.6900 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379355167.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:20 Heat of formation + Delta-G solvation = 54.024175 kcal Electronic energy + Delta-G solvation = -14494.921252 eV Core-core repulsion = 12165.855285 eV Total energy + Delta-G solvation = -2329.065967 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.56920 -37.96021 -34.33934 -33.56817 -32.31913 -28.31449 -28.17266 -27.42604 -26.14902 -23.37341 -20.00535 -19.05419 -18.54323 -17.61131 -16.83909 -16.56888 -16.45021 -15.88234 -15.04452 -14.87663 -14.35622 -14.27330 -13.68862 -13.32846 -13.26240 -12.86945 -12.60342 -12.51098 -12.06686 -11.76250 -11.42098 -11.20437 -11.08012 -10.77733 -10.56703 -10.46298 -8.88473 -8.14984 -5.48976 1.33324 1.46445 1.55627 2.04434 2.16032 2.46321 2.81327 3.04608 3.38115 3.67269 3.81674 4.00455 4.23763 4.33475 4.38744 4.61499 4.71290 4.73112 4.81373 4.96953 5.03429 5.09241 5.11867 5.24504 5.26879 5.35754 5.59380 5.95685 6.20390 6.92693 7.00845 7.65587 8.04150 9.04491 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.015453 C = 0.012323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.527521 B = 1811.457281 C = 2271.675517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.201 4.201 3 C 0.236 3.764 4 N -0.601 5.601 5 C -0.245 4.245 6 H 0.037 0.963 7 C -0.011 4.011 8 N -0.942 5.942 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.315 1.315 12 H -0.253 1.253 13 C 0.136 3.864 14 C -0.142 4.142 15 C -0.089 4.089 16 C 0.058 3.942 17 O -0.403 6.403 18 C 0.040 3.960 19 H 0.234 0.766 20 H 0.077 0.923 21 H 0.094 0.906 22 H 0.261 0.739 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 -5.462 -10.054 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.203 4.203 3 C 0.111 3.889 4 N -0.322 5.322 5 C -0.374 4.374 6 H 0.055 0.945 7 C -0.208 4.208 8 N -0.586 5.586 9 Si 0.760 3.240 10 H -0.201 1.201 11 H -0.245 1.245 12 H -0.177 1.177 13 C 0.011 3.989 14 C -0.145 4.145 15 C -0.147 4.147 16 C -0.019 4.019 17 O -0.322 6.322 18 C -0.037 4.037 19 H 0.250 0.750 20 H 0.095 0.905 21 H 0.112 0.888 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.495 -5.278 -10.141 11.954 hybrid contribution 0.677 0.419 0.306 0.853 sum -2.817 -4.860 -9.835 11.326 Atomic orbital electron populations 1.25410 0.96556 1.00910 1.02278 1.24993 0.96436 0.99588 0.99286 1.18142 0.82991 0.85627 1.02113 1.44070 1.76490 1.09984 1.01615 1.18411 1.09519 1.19740 0.89776 0.94496 1.25809 0.99973 0.96566 0.98422 1.70037 1.33249 1.15604 1.39728 0.86086 0.79920 0.79432 0.78584 1.20051 1.24454 1.17669 1.21441 0.94587 0.95245 0.87592 1.24082 0.98112 0.96695 0.95563 1.21080 0.98364 0.98173 0.97055 1.24170 0.98819 0.90457 0.88420 1.89591 1.33806 1.42690 1.66120 1.24180 0.85682 1.00054 0.93834 0.74951 0.90537 0.88828 0.93027 0.94106 0.90613 0.94868 0.93588 0.93118 0.89340 0.89635 0.89196 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.10 17.64 74.32 1.31 -5.79 16 2 C -0.20 -6.91 11.98 31.13 0.37 -6.54 16 3 C 0.24 8.40 6.19 84.58 0.52 8.92 16 4 N -0.60 -25.79 1.73 -712.53 -1.23 -27.02 16 5 C -0.25 -12.98 8.04 84.03 0.68 -12.31 16 6 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 7 C -0.01 -0.61 5.28 84.86 0.45 -0.16 16 8 N -0.94 -56.71 13.97 21.65 0.30 -56.41 16 9 Si 0.93 43.35 25.08 68.60 1.72 45.07 16 10 H -0.27 -12.06 6.62 99.48 0.66 -11.40 16 11 H -0.32 -15.29 7.11 99.48 0.71 -14.58 16 12 H -0.25 -10.97 7.11 99.48 0.71 -10.27 16 13 C 0.14 5.26 4.14 86.38 0.36 5.61 16 14 C -0.14 -5.12 1.20 -51.48 -0.06 -5.18 16 15 C -0.09 -3.72 8.21 71.98 0.59 -3.13 16 16 C 0.06 1.84 6.80 72.30 0.49 2.33 16 17 O -0.40 -13.60 12.38 -148.98 -1.84 -15.45 16 18 C 0.04 1.23 8.37 72.29 0.60 1.83 16 19 H 0.23 5.28 7.80 -4.41 -0.03 5.24 16 20 H 0.08 2.77 8.04 -2.39 -0.02 2.75 16 21 H 0.09 2.72 7.90 -2.39 -0.02 2.70 16 22 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 23 H 0.04 1.75 3.00 -2.39 -0.01 1.75 16 24 H 0.08 2.44 7.74 -2.38 -0.02 2.42 16 25 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.74 8.09 -2.39 -0.02 1.72 16 27 H 0.05 2.38 6.76 -2.39 -0.02 2.36 16 28 H 0.09 2.50 7.99 -2.38 -0.02 2.48 16 29 H 0.09 2.78 6.24 -2.39 -0.01 2.77 16 30 H 0.09 2.68 8.10 -2.39 -0.02 2.66 16 31 H 0.10 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -62.43 256.10 5.31 -57.12 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.05 Total: 11.09 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 5.31 Total: -14.41 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -0.93 Total: -83.43 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.84 Total: -15.45 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.72 Total: 45.07 kcal Total: -62.43 5.31 -57.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379355167.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.143 kcal (2) G-P(sol) polarization free energy of solvation -62.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds