Wall clock time and date at job start Sun Mar 29 2020 21:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72561 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.54632 * 111.03201 * 267.02160 * 14 13 11 16 16 C 1.51105 * 104.72405 * 217.33051 * 15 14 13 17 17 C 1.30523 * 111.10038 * 16.43906 * 16 15 14 18 18 C 1.51106 * 111.10899 * 359.97438 * 17 16 15 19 19 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 21 21 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 22 22 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 23 23 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 24 24 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 25 25 H 1.08997 * 110.91148 * 31.02716 * 14 13 11 26 26 H 1.08998 * 110.39013 * 336.14683 * 15 14 13 27 27 H 1.09001 * 110.38816 * 98.52235 * 15 14 13 28 28 H 1.08000 * 124.45085 * 196.45730 * 16 15 14 29 29 H 1.08006 * 124.44462 * 180.02562 * 17 16 15 30 30 H 1.08997 * 110.38770 * 224.75542 * 18 17 16 31 31 H 1.09000 * 110.48165 * 102.42607 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9673 -0.0020 12 8 0.2788 -4.9672 -0.0020 13 7 2.1655 -6.1344 -0.0075 14 6 1.4329 -7.4032 -0.0085 15 6 1.2252 -7.9253 1.4321 16 6 1.3774 -9.4247 1.3228 17 6 1.9560 -9.7578 0.2013 18 6 2.2856 -8.5362 -0.6248 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5564 -0.8919 21 1 0.6240 -2.5575 0.8881 22 1 2.8712 -3.6048 0.8890 23 1 2.8725 -3.6040 -0.8909 24 1 3.1354 -6.1345 -0.0114 25 1 0.4811 -7.3024 -0.5299 26 1 1.9837 -7.5141 2.0981 27 1 0.2272 -7.6699 1.7883 28 1 1.0502 -10.1283 2.0740 29 1 2.1703 -10.7733 -0.0975 30 1 2.0088 -8.6965 -1.6668 31 1 3.3463 -8.2979 -0.5468 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379360050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:49 Heat of formation + Delta-G solvation = -59.262891 kcal Electronic energy + Delta-G solvation = -13169.389093 eV Core-core repulsion = 10835.410630 eV Total energy + Delta-G solvation = -2333.978462 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00047 -39.09673 -35.56869 -34.81671 -32.94964 -29.26176 -29.13262 -27.32548 -23.85918 -21.71968 -21.33200 -19.63848 -18.81731 -17.58797 -17.43269 -16.60588 -16.46038 -16.27621 -15.00666 -14.39921 -14.28200 -13.82391 -13.70429 -13.23539 -13.05283 -12.92160 -12.76959 -12.48854 -12.37306 -12.10337 -11.91537 -11.63230 -11.30429 -10.74640 -10.56770 -10.06445 -9.80549 -8.17695 -6.31984 1.36010 1.42690 1.45620 1.56559 1.70526 2.24508 2.45488 3.15403 3.60832 3.73864 4.04873 4.16247 4.36177 4.46500 4.52491 4.56543 4.75627 4.81532 4.94668 4.99782 5.04604 5.14076 5.48859 5.59231 5.60402 5.63267 5.85786 5.98488 6.17851 6.62724 6.86700 7.35820 7.38757 8.95160 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.090522 B = 0.005254 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.242521 B = 5327.718936 C = 5449.227861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.709 5.709 14 C 0.128 3.872 15 C -0.118 4.118 16 C -0.170 4.170 17 C -0.158 4.158 18 C -0.100 4.100 19 H 0.263 0.737 20 H -0.018 1.018 21 H -0.019 1.019 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.417 0.583 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.085 0.915 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 -18.003 0.435 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.470 6.470 13 N -0.362 5.362 14 C 0.023 3.977 15 C -0.156 4.156 16 C -0.188 4.188 17 C -0.176 4.176 18 C -0.137 4.137 19 H 0.071 0.929 20 H 0.000 1.000 21 H 0.000 1.000 22 H 0.123 0.877 23 H 0.124 0.876 24 H 0.255 0.745 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.170 0.830 30 H 0.103 0.897 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.483 -17.892 0.428 19.806 hybrid contribution -0.008 1.010 0.105 1.015 sum 8.475 -16.882 0.533 18.897 Atomic orbital electron populations 1.70181 1.08382 1.27817 1.51502 1.26153 0.95708 1.04001 0.94593 0.85301 0.78659 0.77625 0.78536 1.19670 1.21215 1.17850 1.21725 0.94031 0.91585 1.50795 0.90513 1.18698 0.93759 0.92585 0.94644 1.21643 0.99289 0.89998 1.04938 1.21396 0.87849 0.86893 0.73895 1.90653 1.16826 1.88394 1.51146 1.45885 1.10750 1.04267 1.75336 1.21825 0.96219 0.83237 0.96440 1.21796 1.01721 0.94947 0.97180 1.23302 1.00932 0.95200 0.99396 1.23386 0.99371 0.99270 0.95582 1.21602 1.00649 0.91447 1.00025 0.92862 1.00006 1.00048 0.87712 0.87572 0.74489 0.91178 0.90118 0.92874 0.84108 0.82990 0.89677 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.20 13.29 21.45 0.28 -59.91 16 2 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 3 Si 0.98 44.50 29.54 68.60 2.03 46.52 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.31 4.26 29.85 0.13 2.43 16 10 C -0.12 -4.81 5.64 29.85 0.17 -4.64 16 11 C 0.51 20.13 7.83 87.66 0.69 20.82 16 12 O -0.59 -29.80 15.62 -3.04 -0.05 -29.85 16 13 N -0.71 -19.37 5.15 -437.30 -2.25 -21.62 16 14 C 0.13 3.27 3.54 46.10 0.16 3.43 16 15 C -0.12 -2.84 6.55 30.53 0.20 -2.64 16 16 C -0.17 -3.04 10.78 26.27 0.28 -2.75 16 17 C -0.16 -2.39 10.77 26.27 0.28 -2.11 16 18 C -0.10 -1.68 6.54 30.53 0.20 -1.48 16 19 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 20 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 21 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 22 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 23 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 24 H 0.42 8.06 8.43 -92.71 -0.78 7.28 16 25 H 0.07 2.22 7.54 -2.39 -0.02 2.21 16 26 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.32 7.80 -2.39 -0.02 1.30 16 Total: -1.00 -76.55 268.17 3.14 -73.40 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.33 Total: 9.32 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 2.81 Total: -17.86 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.97 Total: -81.53 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.05 Total: -29.85 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -76.55 3.14 -73.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379360050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.142 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds