Wall clock time and date at job start Sun Mar 29 2020 21:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46999 * 121.37701 * 359.72378 * 13 11 10 15 15 C 1.49922 * 109.38694 * 222.82809 * 14 13 11 16 16 C 1.29456 * 123.63087 * 349.42690 * 15 14 13 17 17 C 1.49963 * 124.61073 * 0.60085 * 16 15 14 18 18 C 1.47339 * 121.37004 * 179.97438 * 13 11 10 19 19 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 21 21 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 22 22 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 23 23 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 24 24 H 1.09006 * 109.52075 * 342.85285 * 14 13 11 25 25 H 1.09005 * 109.52543 * 103.03507 * 14 13 11 26 26 H 1.08000 * 118.19384 * 169.21190 * 15 14 13 27 27 H 1.07998 * 117.69200 * 180.62247 * 16 15 14 28 28 H 1.09004 * 109.31601 * 220.73917 * 17 16 15 29 29 H 1.09000 * 109.31819 * 101.31185 * 17 16 15 30 30 H 1.09004 * 109.77971 * 237.81388 * 18 13 11 31 31 H 1.08998 * 109.78237 * 358.62685 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.6350 -6.1698 -0.0064 15 6 4.1029 -7.2210 -0.9674 16 6 3.3175 -8.0922 -1.5153 17 6 1.8381 -8.1705 -1.2828 18 6 1.4595 -7.4277 0.0019 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5566 0.8902 22 1 2.8718 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 4.0212 -5.1979 -0.3136 25 1 3.9986 -6.4077 0.9934 26 1 5.1526 -7.2512 -1.2194 27 1 3.7590 -8.8137 -2.1868 28 1 1.5417 -9.2158 -1.1953 29 1 1.3161 -7.7202 -2.1270 30 1 1.7633 -8.0130 0.8698 31 1 0.3828 -7.2602 0.0277 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379372576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:09 Heat of formation + Delta-G solvation = -52.555970 kcal Electronic energy + Delta-G solvation = -13501.488143 eV Core-core repulsion = 11167.800514 eV Total energy + Delta-G solvation = -2333.687629 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.12739 -38.43576 -35.61174 -34.05759 -33.00520 -31.90463 -28.06643 -26.40304 -24.73941 -23.17823 -20.85384 -18.99753 -18.40395 -17.80710 -16.85831 -16.60378 -16.41983 -15.72361 -15.27694 -14.68338 -14.41564 -14.22053 -14.04273 -13.53639 -13.21051 -13.01152 -12.83633 -12.44222 -12.42047 -11.95335 -11.67265 -11.60273 -11.28920 -10.72473 -10.58292 -9.98026 -9.63211 -8.18358 -6.32765 1.36015 1.42563 1.44349 1.57682 1.65613 2.02524 2.43445 3.14774 3.67070 3.93477 4.07892 4.14497 4.25830 4.43401 4.45155 4.52467 4.62842 4.72223 4.82404 4.97890 5.02806 5.14943 5.47035 5.55681 5.60810 5.64710 5.84192 5.95919 6.16670 6.43158 6.85798 7.22996 7.37775 8.94871 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058620 B = 0.006535 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.535500 B = 4283.282677 C = 4615.643541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.115 4.115 11 C 0.511 3.489 12 O -0.592 6.592 13 N -0.619 5.619 14 C 0.126 3.874 15 C -0.174 4.174 16 C -0.155 4.155 17 C -0.105 4.105 18 C 0.102 3.898 19 H 0.263 0.737 20 H -0.020 1.020 21 H -0.018 1.018 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.144 0.856 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.676 -15.999 -1.265 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.154 4.154 11 C 0.302 3.698 12 O -0.472 6.472 13 N -0.352 5.352 14 C 0.005 3.995 15 C -0.192 4.192 16 C -0.173 4.173 17 C -0.142 4.142 18 C -0.020 4.020 19 H 0.072 0.928 20 H -0.001 1.001 21 H 0.000 1.000 22 H 0.123 0.877 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.162 0.838 27 H 0.145 0.855 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.910 -15.902 -1.260 19.326 hybrid contribution -0.361 0.897 -0.052 0.969 sum 10.549 -15.005 -1.313 18.389 Atomic orbital electron populations 1.70197 1.08413 1.27787 1.51561 1.26171 0.95728 1.04060 0.94577 0.85237 0.79326 0.77895 0.77561 1.17456 1.20625 1.20587 1.21736 0.94035 0.91473 1.50699 0.90452 1.18703 0.93705 0.92568 0.94602 1.21635 0.99296 0.90011 1.04483 1.21378 0.87621 0.86591 0.74211 1.90630 1.16630 1.87970 1.51976 1.48380 1.08238 1.05314 1.73316 1.20810 0.77520 1.00710 1.00488 1.22476 1.01481 0.96355 0.98885 1.22090 0.94759 0.99698 1.00752 1.20783 0.94874 1.01799 0.96760 1.21776 0.97706 0.83400 0.99161 0.92837 1.00140 0.99992 0.87742 0.88030 0.87975 0.88459 0.83814 0.85532 0.87535 0.92199 0.89171 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.45 13.29 21.45 0.28 -60.17 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.98 44.58 29.54 68.60 2.03 46.60 16 4 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 9 C 0.04 2.40 4.26 29.85 0.13 2.52 16 10 C -0.11 -4.81 4.08 29.85 0.12 -4.69 16 11 C 0.51 21.27 7.72 87.66 0.68 21.95 16 12 O -0.59 -30.70 15.47 -3.03 -0.05 -30.74 16 13 N -0.62 -18.80 2.97 -823.82 -2.45 -21.25 16 14 C 0.13 2.67 6.46 85.30 0.55 3.22 16 15 C -0.17 -2.97 9.90 26.98 0.27 -2.70 16 16 C -0.15 -2.71 9.79 26.99 0.26 -2.44 16 17 C -0.10 -2.12 6.28 29.67 0.19 -1.94 16 18 C 0.10 2.64 6.51 86.27 0.56 3.20 16 19 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 20 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 21 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 22 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 23 H 0.10 3.78 7.56 -2.39 -0.02 3.76 16 24 H 0.10 2.11 6.25 -2.38 -0.01 2.10 16 25 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 27 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.11 7.07 -2.39 -0.02 2.09 16 Total: -1.00 -77.27 262.12 4.36 -72.91 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.10 Total: 4.54 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 3.45 Total: -11.90 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.16 Total: -81.41 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.27 4.36 -72.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379372576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.355 kcal (2) G-P(sol) polarization free energy of solvation -77.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds