Wall clock time and date at job start Sun Mar 29 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21617 * 120.00330 * 0.02562 * 12 11 10 14 14 C 1.47106 * 120.00040 * 180.02562 * 12 11 10 15 15 C 1.32986 * 120.00138 * 180.02562 * 14 12 11 16 16 C 1.51407 * 136.31548 * 359.62331 * 15 14 12 17 17 C 1.53385 * 87.51751 * 206.06276 * 16 15 14 18 18 C 1.51413 * 136.31796 * 180.02562 * 15 14 12 19 19 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 21 21 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 22 22 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 23 23 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 24 24 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 25 25 H 1.07998 * 119.99541 * 0.02562 * 14 12 11 26 26 H 1.08993 * 113.56307 * 320.64490 * 16 15 14 27 27 H 1.08998 * 113.55925 * 91.38375 * 16 15 14 28 28 H 1.09004 * 113.96422 * 220.29494 * 17 16 15 29 29 H 1.08996 * 113.59956 * 88.79878 * 17 16 15 30 30 H 1.09001 * 113.55355 * 268.61999 * 18 15 14 31 31 H 1.08995 * 113.55880 * 39.35111 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.4026 -6.0981 -0.0117 14 6 1.4509 -7.3720 -0.0086 15 6 2.1158 -8.5237 -0.0136 16 6 3.5689 -8.9491 -0.0260 17 6 3.1126 -10.2520 -0.6944 18 6 1.7577 -9.9949 -0.0168 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5564 -0.8919 21 1 0.6240 -2.5575 0.8881 22 1 2.8712 -3.6048 0.8890 23 1 2.8725 -3.6040 -0.8909 24 1 0.5425 -4.9308 -0.0028 25 1 0.3710 -7.3719 -0.0054 26 1 4.1985 -8.3305 -0.6655 27 1 3.9889 -9.0939 0.9693 28 1 3.6264 -11.1409 -0.3284 29 1 3.0783 -10.1956 -1.7824 30 1 1.6806 -10.4266 0.9811 31 1 0.9023 -10.2336 -0.6488 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379374833.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:51 Heat of formation + Delta-G solvation = -34.913743 kcal Electronic energy + Delta-G solvation = -12888.530670 eV Core-core repulsion = 10555.608066 eV Total energy + Delta-G solvation = -2332.922604 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78898 -39.22072 -36.54812 -34.80724 -32.36942 -30.96260 -26.93166 -26.62724 -24.28400 -22.82882 -21.68858 -19.19656 -18.60651 -17.80596 -16.82878 -16.53504 -16.44048 -16.16628 -15.34589 -14.88332 -14.75642 -14.29475 -13.31763 -13.23985 -12.96975 -12.90047 -12.62735 -12.53395 -12.25402 -11.88897 -11.70067 -11.52141 -11.36606 -10.65424 -10.61642 -10.28222 -9.86763 -8.25255 -6.36117 0.40420 1.41142 1.41907 1.53508 2.28202 2.34211 2.46434 3.09330 3.45666 3.60985 3.85140 4.20360 4.28782 4.46895 4.48671 4.63117 4.76419 4.82771 4.87119 4.96699 5.06209 5.26354 5.30586 5.38237 5.49675 5.56102 5.68750 5.78029 6.14907 6.69202 6.77036 7.31838 7.33304 8.86772 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.097672 B = 0.004765 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.606263 B = 5875.351350 C = 6108.217306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.716 5.716 12 C 0.534 3.466 13 O -0.595 6.595 14 C -0.210 4.210 15 C -0.072 4.072 16 C -0.122 4.122 17 C -0.131 4.131 18 C -0.092 4.092 19 H 0.266 0.734 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.411 0.589 25 H 0.161 0.839 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -18.873 -0.081 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.366 5.366 12 C 0.325 3.675 13 O -0.478 6.478 14 C -0.231 4.231 15 C -0.074 4.074 16 C -0.159 4.159 17 C -0.168 4.168 18 C -0.128 4.128 19 H 0.075 0.925 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.247 0.753 25 H 0.179 0.821 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.556 -18.731 -0.082 18.795 hybrid contribution -0.134 1.391 -0.049 1.399 sum 1.422 -17.339 -0.130 17.398 Atomic orbital electron populations 1.70056 1.07570 1.28067 1.50910 1.25886 0.95816 1.03137 0.94299 0.85421 0.78602 0.78320 0.78567 1.19698 1.20356 1.19090 1.21472 0.93568 0.91977 1.51743 0.92387 1.19136 0.94211 0.91759 0.96373 1.21200 0.95068 0.82411 0.99582 1.46061 1.11056 1.05542 1.73900 1.19193 0.87252 0.85315 0.75724 1.90708 1.15633 1.88606 1.52857 1.21683 1.00909 0.89132 1.11334 1.23973 0.98821 0.95730 0.88925 1.22363 0.93970 0.97495 1.02035 1.22714 0.96617 0.97155 1.00307 1.22388 0.98989 0.88277 1.03181 0.92472 0.97296 0.97254 0.93747 0.93791 0.75314 0.82140 0.92620 0.88081 0.88232 0.89733 0.86156 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 2 C 0.01 0.42 5.46 84.66 0.46 0.89 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.18 5.09 29.85 0.15 1.33 16 10 C 0.14 6.41 5.61 86.38 0.48 6.89 16 11 N -0.72 -26.66 5.55 -466.70 -2.59 -29.25 16 12 C 0.53 19.56 7.76 86.57 0.67 20.23 16 13 O -0.59 -26.20 15.15 -4.09 -0.06 -26.26 16 14 C -0.21 -5.56 10.03 23.43 0.23 -5.32 16 15 C -0.07 -1.68 6.93 -17.17 -0.12 -1.80 16 16 C -0.12 -2.80 6.99 30.06 0.21 -2.59 16 17 C -0.13 -1.93 8.17 30.94 0.25 -1.68 16 18 C -0.09 -1.27 7.95 30.16 0.24 -1.03 16 19 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 20 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 21 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 22 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.41 13.02 8.46 -92.70 -0.78 12.23 16 25 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 26 H 0.06 1.62 7.49 -2.39 -0.02 1.60 16 27 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.17 271.28 2.81 -66.36 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.33 Total: 11.93 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 2.82 Total: -14.26 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.31 Total: -83.94 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.17 2.81 -66.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379374833.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.451 kcal (2) G-P(sol) polarization free energy of solvation -69.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds