Wall clock time and date at job start Sun Mar 29 2020 22:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35045 * 126.39849 * 2 1 4 4 N 1.30495 * 108.69990 * 179.82112 * 3 2 1 5 5 C 1.34128 * 109.25774 * 0.44365 * 4 3 2 6 6 C 1.34669 * 108.01780 * 359.72199 * 5 4 3 7 7 C 1.50703 * 126.59045 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46658 * 94.95889 * 7 6 5 9 9 C 1.46904 * 110.99907 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47293 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47198 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00010 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99882 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99864 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47248 * 90.00216 * 15 13 11 17 17 H 1.48500 * 109.47061 * 210.00113 * 15 13 11 18 18 H 1.48499 * 109.47362 * 330.00180 * 15 13 11 19 19 H 1.09002 * 109.47391 * 269.69091 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.69147 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.69274 * 1 2 3 22 22 H 1.07997 * 125.64821 * 359.97332 * 3 2 1 23 23 H 1.08000 * 125.99029 * 179.72614 * 5 4 3 24 24 H 1.08997 * 109.47323 * 214.96050 * 7 6 5 25 25 H 1.09002 * 109.47144 * 334.96812 * 7 6 5 26 26 H 1.00895 * 111.00493 * 303.95539 * 8 7 6 27 27 H 1.08997 * 109.46980 * 300.00565 * 9 8 7 28 28 H 1.09009 * 109.46397 * 60.00258 * 9 8 7 29 29 H 1.09003 * 109.47306 * 300.00574 * 10 9 8 30 30 H 1.08997 * 109.46985 * 60.00033 * 10 9 8 31 31 H 0.97005 * 119.99741 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0039 5 6 3.5461 -0.6505 -0.0034 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0131 8 7 1.5784 -2.9828 1.3646 9 6 1.1449 -4.3860 1.3966 10 6 0.8858 -4.8069 2.8446 11 6 0.4418 -6.2466 2.8775 12 1 0.3528 -6.8054 1.9576 13 6 0.1481 -6.8501 4.0819 14 7 -0.2399 -8.1064 4.1105 15 14 0.3014 -5.8833 5.6729 16 1 -0.9916 -5.2180 5.9744 17 1 0.6531 -6.8068 6.7813 18 1 1.3644 -4.8566 5.5278 19 1 -0.3634 -0.0055 1.0276 20 1 -0.3633 -0.8872 -0.5186 21 1 -0.3633 0.8928 -0.5091 22 1 1.9334 2.1144 -0.0004 23 1 4.4369 -1.2611 -0.0066 24 1 0.9248 -2.6410 -0.6025 25 1 2.6205 -3.1605 -0.4508 26 1 2.3897 -2.8413 1.9473 27 1 0.2284 -4.4965 0.8170 28 1 1.9240 -5.0168 0.9683 29 1 1.8021 -4.6963 3.4246 30 1 0.1067 -4.1761 3.2724 31 1 -0.4462 -8.5311 4.9579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379377095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:52 Heat of formation + Delta-G solvation = 55.310832 kcal Electronic energy + Delta-G solvation = -13161.144015 eV Core-core repulsion = 10864.426594 eV Total energy + Delta-G solvation = -2296.717422 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.03299 -36.22850 -33.98217 -33.03966 -31.12627 -28.89907 -26.99630 -25.38623 -23.14543 -21.40477 -20.58296 -19.78013 -17.04295 -16.81364 -15.75410 -15.50446 -14.39788 -14.19405 -14.16449 -13.57168 -13.37899 -12.89053 -12.84203 -12.65668 -12.55792 -11.93129 -11.33645 -11.05456 -10.24004 -10.04458 -9.82735 -9.80363 -9.54725 -9.26880 -8.56644 -8.40477 -8.02887 -6.07370 -4.06097 2.03058 2.80842 3.17500 3.30592 3.37924 3.42851 4.43700 4.59668 4.65476 4.71318 4.81129 5.05721 5.26744 5.27793 5.35513 5.43758 5.66284 5.77240 6.10039 6.17897 6.40630 6.70821 6.74258 7.04138 7.19134 7.33554 7.50577 7.67073 7.83436 8.07709 8.49402 8.96353 9.54961 11.05894 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052315 B = 0.005774 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.089645 B = 4847.883273 C = 4913.069326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.449 5.449 3 C 0.172 3.828 4 N -0.497 5.497 5 C -0.030 4.030 6 C -0.009 4.009 7 C 0.130 3.870 8 N -0.693 5.693 9 C 0.073 3.927 10 C -0.009 4.009 11 C -0.523 4.523 12 H 0.071 0.929 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 H 0.081 0.919 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.202 0.798 23 H 0.166 0.834 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.340 0.660 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.014 0.986 30 H 0.020 0.980 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 15.946 -8.287 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.132 5.132 3 C -0.110 4.110 4 N -0.215 5.215 5 C -0.179 4.179 6 C -0.125 4.125 7 C 0.000 4.000 8 N -0.325 5.325 9 C -0.055 4.055 10 C -0.047 4.047 11 C -0.561 4.561 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.542 5.542 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.190 1.190 19 H 0.100 0.900 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.219 0.781 23 H 0.184 0.816 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.158 0.842 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.662 16.554 -8.154 18.528 hybrid contribution 0.041 -0.573 0.744 0.940 sum 1.703 15.981 -7.410 17.697 Atomic orbital electron populations 1.22020 0.76439 1.04097 1.04177 1.45244 1.07760 1.06582 1.53598 1.24856 0.85754 0.93405 1.07017 1.70235 1.19510 1.12036 1.19723 1.22065 0.95757 0.91144 1.08890 1.21288 0.90966 0.89906 1.10351 1.20258 1.00156 0.87261 0.92305 1.60658 1.40410 1.23383 1.08007 1.21985 0.98761 0.84285 1.00428 1.19537 0.96701 0.96898 0.91570 1.21057 1.45408 0.94781 0.94863 0.91074 1.25003 0.94439 0.94763 0.99148 1.69915 1.46231 1.11632 1.26431 0.86741 0.79052 0.80104 0.83149 1.20286 1.21431 1.18981 0.89997 0.89551 0.89909 0.78140 0.81641 0.90670 0.92966 0.84197 0.91730 0.95640 0.96768 0.96201 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 11.01 59.85 0.66 1.30 16 2 N -0.45 -5.30 3.15 -121.36 -0.38 -5.68 16 3 C 0.17 2.03 12.56 -90.38 -1.14 0.90 16 4 N -0.50 -7.29 11.25 -14.67 -0.17 -7.46 16 5 C -0.03 -0.42 11.79 -17.81 -0.21 -0.63 16 6 C -0.01 -0.13 6.46 -81.60 -0.53 -0.65 16 7 C 0.13 1.76 5.92 -4.97 -0.03 1.73 16 8 N -0.69 -11.31 6.49 -115.05 -0.75 -12.06 16 9 C 0.07 1.42 5.62 -3.83 -0.02 1.40 16 10 C -0.01 -0.22 4.30 -27.89 -0.12 -0.34 16 11 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 12 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 15 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 19 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.09 0.73 7.30 -51.93 -0.38 0.35 16 21 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 23 H 0.17 2.05 8.06 -52.49 -0.42 1.62 16 24 H 0.07 0.96 7.38 -51.93 -0.38 0.58 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.34 5.55 8.72 -39.29 -0.34 5.20 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 30 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -32.82 267.18 -7.40 -40.21 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.42 Total: 0.38 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.82 Total: -9.57 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.52 Total: -52.23 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.82 -7.40 -40.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379377095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.523 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds