Wall clock time and date at job start Sun Mar 29 2020 22:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35045 * 126.39849 * 2 1 4 4 N 1.30495 * 108.69990 * 179.82112 * 3 2 1 5 5 C 1.34128 * 109.25774 * 0.44365 * 4 3 2 6 6 C 1.34669 * 108.01780 * 359.72199 * 5 4 3 7 7 C 1.50703 * 126.59045 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46658 * 94.95889 * 7 6 5 9 9 C 1.46904 * 110.99907 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47293 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47198 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00010 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99882 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99864 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47248 * 90.00216 * 15 13 11 17 17 H 1.48500 * 109.47061 * 210.00113 * 15 13 11 18 18 H 1.48499 * 109.47362 * 330.00180 * 15 13 11 19 19 H 1.09002 * 109.47391 * 269.69091 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.69147 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.69274 * 1 2 3 22 22 H 1.07997 * 125.64821 * 359.97332 * 3 2 1 23 23 H 1.08000 * 125.99029 * 179.72614 * 5 4 3 24 24 H 1.08997 * 109.47323 * 214.96050 * 7 6 5 25 25 H 1.09002 * 109.47144 * 334.96812 * 7 6 5 26 26 H 1.00895 * 111.00493 * 303.95539 * 8 7 6 27 27 H 1.08997 * 109.46980 * 300.00565 * 9 8 7 28 28 H 1.09009 * 109.46397 * 60.00258 * 9 8 7 29 29 H 1.09003 * 109.47306 * 300.00574 * 10 9 8 30 30 H 1.08997 * 109.46985 * 60.00033 * 10 9 8 31 31 H 0.97005 * 119.99741 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0039 5 6 3.5461 -0.6505 -0.0034 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0131 8 7 1.5784 -2.9828 1.3646 9 6 1.1449 -4.3860 1.3966 10 6 0.8858 -4.8069 2.8446 11 6 0.4418 -6.2466 2.8775 12 1 0.3528 -6.8054 1.9576 13 6 0.1481 -6.8501 4.0819 14 7 -0.2399 -8.1064 4.1105 15 14 0.3014 -5.8833 5.6729 16 1 -0.9916 -5.2180 5.9744 17 1 0.6531 -6.8068 6.7813 18 1 1.3644 -4.8566 5.5278 19 1 -0.3634 -0.0055 1.0276 20 1 -0.3633 -0.8872 -0.5186 21 1 -0.3633 0.8928 -0.5091 22 1 1.9334 2.1144 -0.0004 23 1 4.4369 -1.2611 -0.0066 24 1 0.9248 -2.6410 -0.6025 25 1 2.6205 -3.1605 -0.4508 26 1 2.3897 -2.8413 1.9473 27 1 0.2284 -4.4965 0.8170 28 1 1.9240 -5.0168 0.9683 29 1 1.8021 -4.6963 3.4246 30 1 0.1067 -4.1761 3.2724 31 1 -0.4462 -8.5311 4.9579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379377095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:51 Heat of formation + Delta-G solvation = 32.842318 kcal Electronic energy + Delta-G solvation = -13162.118323 eV Core-core repulsion = 10864.426594 eV Total energy + Delta-G solvation = -2297.691730 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.96650 -37.64149 -35.12968 -34.77010 -32.74409 -30.34115 -27.75312 -26.87814 -24.68709 -22.35815 -22.29370 -20.81150 -18.96512 -17.95714 -16.80912 -16.66605 -16.33403 -15.43962 -15.23669 -15.00663 -14.65544 -14.39365 -14.04697 -13.69566 -13.59979 -13.30067 -12.90207 -12.81897 -12.02383 -11.84181 -11.69387 -11.42067 -10.91450 -10.77637 -10.46922 -9.50898 -9.25504 -8.30589 -6.34954 1.07604 1.36545 1.38078 1.50394 1.99053 2.19254 2.35791 3.05325 3.37450 3.76005 3.92809 4.03691 4.21562 4.36867 4.46645 4.52235 4.55333 4.63273 4.79044 4.85729 4.96080 5.26403 5.44813 5.48095 5.61604 5.76943 6.05919 6.23356 6.35325 6.42637 6.73642 7.13017 7.30214 8.86012 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052315 B = 0.005774 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.089645 B = 4847.883273 C = 4913.069326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.451 5.451 3 C 0.181 3.819 4 N -0.536 5.536 5 C -0.045 4.045 6 C -0.022 4.022 7 C 0.137 3.863 8 N -0.690 5.690 9 C 0.088 3.912 10 C -0.004 4.004 11 C -0.533 4.533 12 H 0.035 0.965 13 C 0.007 3.993 14 N -0.950 5.950 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.249 1.249 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.117 0.883 22 H 0.240 0.760 23 H 0.171 0.829 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.342 0.658 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.021 0.979 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 18.249 -7.990 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.133 5.133 3 C -0.102 4.102 4 N -0.255 5.255 5 C -0.194 4.194 6 C -0.138 4.138 7 C 0.007 3.993 8 N -0.322 5.322 9 C -0.041 4.041 10 C -0.042 4.042 11 C -0.572 4.572 12 H 0.053 0.947 13 C -0.190 4.190 14 N -0.591 5.591 15 Si 0.776 3.224 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.173 1.173 19 H 0.097 0.903 20 H 0.103 0.897 21 H 0.135 0.865 22 H 0.256 0.744 23 H 0.189 0.811 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.159 0.841 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.482 18.871 -7.878 20.503 hybrid contribution 0.075 -1.279 0.558 1.398 sum 1.557 17.591 -7.320 19.117 Atomic orbital electron populations 1.22256 0.74500 1.05844 1.04496 1.45471 1.08965 1.06033 1.52814 1.25623 0.85071 0.94835 1.04646 1.70226 1.21359 1.12323 1.21561 1.22303 0.96463 0.91442 1.09174 1.21193 0.91159 0.90145 1.11332 1.20218 1.00859 0.87613 0.90606 1.60560 1.40771 1.20939 1.09925 1.21644 0.98776 0.86134 0.97531 1.19428 0.96426 0.93903 0.94469 1.21411 1.45111 0.96997 0.93640 0.94689 1.25965 0.94079 0.95730 1.03222 1.70061 1.47771 1.13626 1.27631 0.85632 0.79793 0.78844 0.78172 1.19231 1.21015 1.17307 0.90277 0.89654 0.86495 0.74383 0.81143 0.89836 0.92238 0.84066 0.91936 0.95988 0.96498 0.96088 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 11.01 127.77 1.41 2.39 16 2 N -0.45 -9.49 3.15 -537.88 -1.70 -11.18 16 3 C 0.18 3.79 12.56 180.26 2.26 6.05 16 4 N -0.54 -14.90 11.25 -200.32 -2.25 -17.16 16 5 C -0.05 -1.23 11.79 83.52 0.98 -0.24 16 6 C -0.02 -0.55 6.46 40.95 0.26 -0.29 16 7 C 0.14 3.46 5.92 85.56 0.51 3.96 16 8 N -0.69 -21.36 6.49 -517.92 -3.36 -24.72 16 9 C 0.09 3.32 5.62 86.30 0.49 3.81 16 10 C 0.00 -0.21 4.30 29.84 0.13 -0.08 16 11 C -0.53 -30.57 9.66 25.60 0.25 -30.32 16 12 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 13 C 0.01 0.41 5.47 84.66 0.46 0.88 16 14 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 15 Si 0.95 44.51 27.47 68.60 1.88 46.40 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 19 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 20 H 0.08 1.22 7.30 -2.39 -0.02 1.21 16 21 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.24 2.75 8.06 -2.91 -0.02 2.73 16 23 H 0.17 4.14 8.06 -2.91 -0.02 4.11 16 24 H 0.08 1.97 7.38 -2.39 -0.02 1.95 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.34 10.54 8.72 -89.70 -0.78 9.76 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 30 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 31 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -70.56 267.18 1.90 -68.66 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.27 Total: 11.05 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 6.75 Total: -13.84 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -7.01 Total: -112.26 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -70.56 1.90 -68.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379377095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.499 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds