Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46901 * 110.99997 * 176.05050 * 12 2 1 14 14 C 1.46906 * 110.99793 * 299.99861 * 12 2 1 15 15 C 1.50694 * 109.47003 * 170.00077 * 14 12 2 16 16 C 1.34668 * 126.59268 * 264.68527 * 15 14 12 17 17 N 1.34132 * 108.02103 * 179.87390 * 16 15 14 18 18 C 1.30496 * 109.25546 * 0.40127 * 17 16 15 19 19 N 1.35042 * 108.70180 * 359.75482 * 18 17 16 20 20 H 0.97003 * 126.39723 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47449 * 59.99368 * 13 12 2 26 26 H 1.09003 * 109.46802 * 180.02562 * 13 12 2 27 27 H 1.09006 * 109.46956 * 299.99537 * 13 12 2 28 28 H 1.09000 * 109.47278 * 290.00305 * 14 12 2 29 29 H 1.09001 * 109.46877 * 50.00233 * 14 12 2 30 30 H 1.07997 * 125.99226 * 0.03172 * 16 15 14 31 31 H 1.08000 * 125.65256 * 179.73052 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7945 1.1871 14 6 1.5486 -0.0264 2.4211 15 6 1.8578 -0.8911 3.6159 16 6 1.0257 -1.7684 4.2088 17 7 1.6814 -2.3354 5.2324 18 6 2.8852 -1.8366 5.3015 19 7 3.0364 -0.9314 4.3109 20 1 3.8316 -0.4074 4.1264 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7096 1.1617 -3.4844 25 1 3.9186 0.2051 1.1592 26 1 3.8208 -1.3117 2.0860 27 1 3.8030 -1.3532 0.3068 28 1 2.0518 0.9346 2.5281 29 1 0.4721 0.1324 2.3563 30 1 0.0096 -1.9804 3.9107 31 1 3.6362 -2.1031 6.0306 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379381044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = 66.563708 kcal Electronic energy + Delta-G solvation = -13809.825989 eV Core-core repulsion = 11513.596528 eV Total energy + Delta-G solvation = -2296.229461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.75237 -37.03220 -33.06256 -32.11547 -30.28349 -29.04322 -26.50312 -24.64170 -23.25319 -21.27575 -20.57056 -19.54500 -17.53782 -16.26801 -15.38301 -14.84409 -14.39270 -13.84455 -13.67849 -13.52735 -13.09312 -12.50676 -12.22631 -11.97559 -11.22736 -11.05609 -10.76699 -10.68620 -10.21240 -10.13351 -9.96090 -9.76292 -9.72115 -8.94444 -8.48332 -8.08218 -7.27310 -6.05733 -4.10578 2.31861 3.28466 3.34933 3.36249 3.38131 3.44279 4.37852 4.87884 5.05989 5.24875 5.30480 5.44378 5.76755 5.95626 5.97135 6.10956 6.21563 6.55788 6.65524 6.79314 6.99668 7.03150 7.07240 7.43896 7.58871 7.63984 7.78105 8.11982 8.25243 8.30562 8.51275 8.95325 9.54711 11.01009 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058585 B = 0.007476 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.823419 B = 3744.222038 C = 3937.034046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.037 3.963 14 C 0.119 3.881 15 C 0.008 3.992 16 C -0.021 4.021 17 N -0.498 5.498 18 C 0.167 3.833 19 N -0.569 5.569 20 H 0.415 0.585 21 H 0.086 0.914 22 H 0.037 0.963 23 H 0.010 0.990 24 H 0.261 0.739 25 H 0.010 0.990 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -0.543 10.185 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.256 5.256 13 C -0.112 4.112 14 C -0.011 4.011 15 C -0.108 4.108 16 C -0.169 4.169 17 N -0.217 5.217 18 C -0.116 4.116 19 N -0.173 5.173 20 H 0.252 0.748 21 H 0.105 0.895 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.071 0.929 25 H 0.029 0.971 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.118 0.882 30 H 0.185 0.815 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.298 -1.519 10.550 11.157 hybrid contribution 1.445 1.209 -1.471 2.390 sum 4.742 -0.311 9.078 10.247 Atomic orbital electron populations 1.21879 0.97495 0.99953 0.99993 1.19287 0.92529 0.91914 0.85581 0.98344 1.21138 1.31219 1.12322 0.89691 0.91862 1.24926 0.95167 0.95049 0.99037 1.69886 1.36870 1.22947 1.23506 0.86506 0.79227 0.79316 0.82409 1.20565 1.21310 1.19989 1.62188 1.09155 1.52591 1.01617 1.22239 0.89002 0.98802 1.01163 1.20615 1.02121 0.91868 0.86455 1.21474 0.86707 1.04458 0.98203 1.22023 1.00805 0.98333 0.95752 1.70224 1.04552 1.26106 1.20825 1.24795 0.97444 0.93884 0.95490 1.43390 1.14033 1.34267 1.25622 0.74767 0.89524 0.94376 0.97155 0.92917 0.97134 0.94367 0.90319 0.95441 0.88171 0.81523 0.78182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.76 37.16 0.33 -2.88 16 2 C 0.21 5.23 2.06 -68.86 -0.14 5.09 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 4 C -0.51 -13.62 7.93 -34.44 -0.27 -13.89 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.53 -11.17 4.61 -237.72 -1.10 -12.27 16 13 C 0.04 0.70 9.07 60.07 0.54 1.25 16 14 C 0.12 2.10 5.34 -4.98 -0.03 2.07 16 15 C 0.01 0.12 5.95 -81.60 -0.49 -0.36 16 16 C -0.02 -0.36 11.79 -17.81 -0.21 -0.57 16 17 N -0.50 -8.18 11.25 -14.67 -0.17 -8.35 16 18 C 0.17 2.17 13.04 -90.38 -1.18 0.99 16 19 N -0.57 -7.42 5.20 -10.30 -0.05 -7.47 16 20 H 0.41 4.27 8.71 -40.82 -0.36 3.92 16 21 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.63 6.17 -51.93 -0.32 0.31 16 27 H 0.08 1.64 6.23 -51.93 -0.32 1.32 16 28 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.10 1.77 5.83 -51.93 -0.30 1.47 16 30 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 31 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 255.06 15.07 3.84 3.84 Total: -1.00 -30.29 255.06 -7.35 -37.64 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.95 Total: 1.71 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.54 Total: -6.78 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.69 Total: -52.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.29 -7.35 -37.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379381044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.207 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds