Wall clock time and date at job start Sun Mar 29 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46901 * 110.99997 * 176.05050 * 12 2 1 14 14 C 1.46906 * 110.99793 * 299.99861 * 12 2 1 15 15 C 1.50694 * 109.47003 * 170.00077 * 14 12 2 16 16 C 1.34668 * 126.59268 * 264.68527 * 15 14 12 17 17 N 1.34132 * 108.02103 * 179.87390 * 16 15 14 18 18 C 1.30496 * 109.25546 * 0.40127 * 17 16 15 19 19 N 1.35042 * 108.70180 * 359.75482 * 18 17 16 20 20 H 0.97003 * 126.39723 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47449 * 59.99368 * 13 12 2 26 26 H 1.09003 * 109.46802 * 180.02562 * 13 12 2 27 27 H 1.09006 * 109.46956 * 299.99537 * 13 12 2 28 28 H 1.09000 * 109.47278 * 290.00305 * 14 12 2 29 29 H 1.09001 * 109.46877 * 50.00233 * 14 12 2 30 30 H 1.07997 * 125.99226 * 0.03172 * 16 15 14 31 31 H 1.08000 * 125.65256 * 179.73052 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7945 1.1871 14 6 1.5486 -0.0264 2.4211 15 6 1.8578 -0.8911 3.6159 16 6 1.0257 -1.7684 4.2088 17 7 1.6814 -2.3354 5.2324 18 6 2.8852 -1.8366 5.3015 19 7 3.0364 -0.9314 4.3109 20 1 3.8316 -0.4074 4.1264 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7096 1.1617 -3.4844 25 1 3.9186 0.2051 1.1592 26 1 3.8208 -1.3117 2.0860 27 1 3.8030 -1.3532 0.3068 28 1 2.0518 0.9346 2.5281 29 1 0.4721 0.1324 2.3563 30 1 0.0096 -1.9804 3.9107 31 1 3.6362 -2.1031 6.0306 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379381044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:36 Heat of formation + Delta-G solvation = 46.412485 kcal Electronic energy + Delta-G solvation = -13810.699812 eV Core-core repulsion = 11513.596528 eV Total energy + Delta-G solvation = -2297.103283 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.89721 -38.72266 -34.95825 -33.33891 -31.78591 -30.76416 -28.09058 -26.48101 -24.87441 -22.40956 -21.89371 -21.22750 -18.80226 -18.19472 -17.11968 -16.22894 -16.01275 -15.38110 -15.14436 -14.93459 -14.31607 -14.23144 -13.88059 -13.52758 -12.97551 -12.84914 -12.60855 -12.51166 -12.11708 -11.98731 -11.79153 -11.04844 -10.87202 -10.82336 -10.52281 -9.32866 -8.94647 -8.11983 -6.23748 1.15875 1.41890 1.43649 1.52720 2.25967 2.33298 2.42650 3.16416 3.47844 3.85902 4.07100 4.19712 4.42729 4.62592 4.63234 4.67220 4.79492 4.92975 5.00216 5.05503 5.23269 5.35252 5.49889 5.70864 5.78150 5.82434 6.25785 6.34711 6.60601 6.68959 6.89968 7.18132 7.45435 8.93638 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058585 B = 0.007476 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.823419 B = 3744.222038 C = 3937.034046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.217 3.783 3 H -0.031 1.031 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.541 5.541 13 C 0.042 3.958 14 C 0.125 3.875 15 C -0.007 4.007 16 C -0.036 4.036 17 N -0.536 5.536 18 C 0.192 3.808 19 N -0.560 5.560 20 H 0.430 0.570 21 H 0.061 0.939 22 H 0.031 0.969 23 H 0.036 0.964 24 H 0.262 0.738 25 H 0.013 0.987 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -1.118 11.242 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.266 5.266 13 C -0.106 4.106 14 C -0.003 4.003 15 C -0.124 4.124 16 C -0.183 4.183 17 N -0.256 5.256 18 C -0.092 4.092 19 N -0.165 5.165 20 H 0.270 0.730 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.183 0.817 31 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.534 -2.085 11.615 12.642 hybrid contribution 1.102 1.380 -1.685 2.441 sum 5.637 -0.705 9.930 11.440 Atomic orbital electron populations 1.21704 0.97109 0.99427 1.00034 1.19064 0.92822 0.90298 0.86735 1.01344 1.21423 1.31251 1.12278 0.91004 0.92451 1.25671 0.95368 0.95729 1.01790 1.70005 1.37688 1.24050 1.24099 0.85557 0.78810 0.78253 0.79009 1.20293 1.20869 1.19405 1.62093 1.10294 1.52590 1.01629 1.22182 0.87974 0.98974 1.01502 1.20494 1.01872 0.92331 0.85652 1.21082 0.88084 1.04882 0.98303 1.22165 1.01227 0.98660 0.96273 1.70237 1.06256 1.27631 1.21438 1.25722 0.97067 0.91618 0.94822 1.43340 1.13700 1.34338 1.25147 0.73036 0.92064 0.95004 0.94525 0.92879 0.96816 0.91600 0.92421 0.94689 0.88583 0.81728 0.73538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.76 71.98 0.63 -5.35 16 2 C 0.22 10.81 2.06 44.17 0.09 10.91 16 3 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 4 C -0.52 -28.35 7.93 25.60 0.20 -28.15 16 5 H 0.06 3.12 6.39 -2.91 -0.02 3.11 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.16 11.32 21.45 0.24 -51.91 16 8 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.54 -22.51 4.61 -906.02 -4.18 -26.69 16 13 C 0.04 1.57 9.07 127.69 1.16 2.73 16 14 C 0.13 4.30 5.34 85.55 0.46 4.76 16 15 C -0.01 -0.22 5.95 40.95 0.24 0.03 16 16 C -0.04 -1.16 11.79 83.52 0.98 -0.17 16 17 N -0.54 -16.43 11.25 -200.31 -2.25 -18.69 16 18 C 0.19 4.27 13.04 180.26 2.35 6.62 16 19 N -0.56 -12.86 5.20 -186.50 -0.97 -13.83 16 20 H 0.43 7.31 8.71 -92.71 -0.81 6.50 16 21 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 22 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.04 1.51 6.20 -2.39 -0.01 1.49 16 24 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.07 2.05 6.17 -2.39 -0.01 2.03 16 27 H 0.06 2.38 6.23 -2.38 -0.01 2.36 16 28 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 29 H 0.10 3.33 5.83 -2.39 -0.01 3.32 16 30 H 0.17 5.14 8.06 -2.91 -0.02 5.12 16 31 H 0.25 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -64.83 255.06 1.76 -63.08 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.33 Total: 10.15 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 6.57 Total: -7.45 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -7.16 Total: -111.12 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -64.83 1.76 -63.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379381044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.488 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds