Wall clock time and date at job start Sun Mar 29 2020 21:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47451 * 2 1 4 4 C 1.50699 * 109.47393 * 120.00017 * 2 1 3 5 5 H 1.07997 * 120.00089 * 119.99909 * 4 2 1 6 6 C 1.37884 * 120.00067 * 300.00579 * 4 2 1 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47285 * 59.99070 * 8 6 4 10 10 H 1.48494 * 109.47400 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46709 * 299.99808 * 8 6 4 12 12 N 1.46902 * 109.47351 * 240.00350 * 2 1 3 13 13 C 1.46906 * 110.99573 * 306.04551 * 12 2 1 14 14 C 1.46898 * 111.00283 * 69.99692 * 12 2 1 15 15 C 1.50697 * 109.47095 * 169.99991 * 14 12 2 16 16 C 1.34668 * 126.59383 * 264.68807 * 15 14 12 17 17 N 1.34130 * 108.01963 * 179.87537 * 16 15 14 18 18 C 1.30502 * 109.25524 * 0.40120 * 17 16 15 19 19 N 1.35042 * 108.69793 * 359.75236 * 18 17 16 20 20 H 0.97005 * 126.39181 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.46526 * 59.99912 * 1 2 3 22 22 H 1.08991 * 109.46937 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47190 * 300.00149 * 1 2 3 24 24 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46544 * 183.95424 * 13 12 2 26 26 H 1.09001 * 109.47272 * 303.95030 * 13 12 2 27 27 H 1.09000 * 109.47033 * 63.95479 * 13 12 2 28 28 H 1.08992 * 109.47062 * 290.00772 * 14 12 2 29 29 H 1.09003 * 109.46753 * 50.00460 * 14 12 2 30 30 H 1.08001 * 125.98644 * 0.02731 * 16 15 14 31 31 H 1.07998 * 125.64545 * 179.73135 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8064 -1.1210 4.0082 10 1 1.8269 -0.4200 5.2205 11 1 1.8258 -2.5202 4.0077 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0973 -2.4091 15 6 2.4775 -0.5162 -3.5794 16 6 3.6867 -0.1584 -4.0521 17 7 3.9739 -0.9483 -5.0973 18 6 2.9849 -1.7763 -5.2956 19 7 2.0304 -1.5402 -4.3700 20 1 1.1858 -2.0090 -4.2817 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7094 1.1617 3.4844 25 1 1.8665 -2.5520 -2.1649 26 1 1.6467 -2.5988 -0.3992 27 1 0.3556 -1.9520 -1.4400 28 1 0.6815 0.1054 -2.6087 29 1 2.1026 1.1189 -2.2603 30 1 4.3160 0.6254 -3.6570 31 1 2.9376 -2.5259 -6.0717 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379381045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:38 Heat of formation + Delta-G solvation = 65.420835 kcal Electronic energy + Delta-G solvation = -13824.866475 eV Core-core repulsion = 11528.587456 eV Total energy + Delta-G solvation = -2296.279019 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.75205 -37.22203 -33.02731 -32.11528 -30.43455 -28.34398 -26.33674 -25.27407 -23.50879 -21.27913 -20.52773 -19.42553 -17.48859 -16.15739 -15.45857 -14.72020 -14.38854 -13.91950 -13.80792 -13.36675 -13.11631 -12.66116 -12.28274 -11.58758 -11.24637 -11.11534 -10.83902 -10.75229 -10.59450 -10.12077 -9.96173 -9.73287 -9.72078 -8.98630 -8.41700 -8.10222 -7.24664 -6.04344 -4.08235 2.31828 3.31143 3.35530 3.36343 3.39067 3.44335 4.39665 4.87934 5.08227 5.26364 5.30149 5.43960 5.77112 5.96158 5.97266 6.11845 6.19073 6.53495 6.59039 6.71686 6.78650 7.02059 7.03423 7.36242 7.58659 7.63348 7.78910 8.04987 8.29793 8.30778 8.51592 8.97198 9.56915 11.02721 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056507 B = 0.007417 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.398811 B = 3774.226835 C = 3896.216734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.042 0.958 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.528 5.528 13 C 0.033 3.967 14 C 0.123 3.877 15 C 0.007 3.993 16 C -0.022 4.022 17 N -0.498 5.498 18 C 0.167 3.833 19 N -0.568 5.568 20 H 0.415 0.585 21 H 0.006 0.994 22 H 0.031 0.969 23 H 0.090 0.910 24 H 0.261 0.739 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.015 0.985 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.168 0.832 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -3.746 -10.535 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.060 0.940 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.252 5.252 13 C -0.115 4.115 14 C -0.006 4.006 15 C -0.109 4.109 16 C -0.169 4.169 17 N -0.217 5.217 18 C -0.116 4.116 19 N -0.173 5.173 20 H 0.252 0.748 21 H 0.025 0.975 22 H 0.050 0.950 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.185 0.815 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.138 -3.602 -10.794 11.380 hybrid contribution -1.787 -0.717 1.286 2.315 sum -1.925 -4.318 -9.509 10.619 Atomic orbital electron populations 1.22425 1.00804 0.99383 1.00594 1.19348 0.89737 0.94651 0.85753 0.94039 1.21051 1.30668 1.12595 0.89559 0.92000 1.24921 0.95185 0.95131 0.99001 1.69864 1.36988 1.22995 1.23601 0.86565 0.79318 0.79531 0.82020 1.20158 1.21360 1.20422 1.62392 1.58838 1.02255 1.01673 1.22262 0.95695 0.92209 1.01364 1.20508 0.95731 0.97487 0.86900 1.21472 0.98234 0.94054 0.97146 1.22035 0.95323 1.03042 0.96529 1.70225 1.26260 1.07266 1.17962 1.24794 0.86518 1.03073 0.97234 1.43364 1.18944 1.29169 1.25783 0.74786 0.97509 0.95044 0.89169 0.92892 0.94387 0.90565 0.96637 0.94997 0.88926 0.81493 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.22 37.16 0.31 -3.71 16 2 C 0.21 5.13 2.31 -68.86 -0.16 4.97 16 3 H 0.04 1.10 7.93 -51.93 -0.41 0.69 16 4 C -0.50 -13.47 7.91 -34.44 -0.27 -13.74 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.03 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.53 -10.99 4.69 -237.73 -1.12 -12.10 16 13 C 0.03 0.63 8.49 60.07 0.51 1.14 16 14 C 0.12 2.15 5.09 -4.98 -0.03 2.12 16 15 C 0.01 0.11 5.94 -81.60 -0.48 -0.37 16 16 C -0.02 -0.36 11.79 -17.81 -0.21 -0.57 16 17 N -0.50 -8.17 11.25 -14.66 -0.16 -8.33 16 18 C 0.17 2.16 13.04 -90.37 -1.18 0.98 16 19 N -0.57 -7.37 5.25 -10.30 -0.05 -7.42 16 20 H 0.41 4.24 8.81 -40.82 -0.36 3.88 16 21 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 22 H 0.03 0.70 6.41 -51.93 -0.33 0.37 16 23 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 26 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 27 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16 28 H 0.03 0.54 7.06 -51.93 -0.37 0.17 16 29 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16 30 H 0.17 2.61 8.06 -52.49 -0.42 2.18 16 31 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 253.80 15.07 3.82 3.82 Total: -1.00 -30.06 253.80 -7.44 -37.51 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -3.93 Total: 2.46 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.61 Total: -7.67 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.71 Total: -52.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.06 -7.44 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379381045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.928 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds