Wall clock time and date at job start Sun Mar 29 2020 21:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47451 * 2 1 4 4 C 1.50699 * 109.47393 * 120.00017 * 2 1 3 5 5 H 1.07997 * 120.00089 * 119.99909 * 4 2 1 6 6 C 1.37884 * 120.00067 * 300.00579 * 4 2 1 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47285 * 59.99070 * 8 6 4 10 10 H 1.48494 * 109.47400 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46709 * 299.99808 * 8 6 4 12 12 N 1.46902 * 109.47351 * 240.00350 * 2 1 3 13 13 C 1.46906 * 110.99573 * 306.04551 * 12 2 1 14 14 C 1.46898 * 111.00283 * 69.99692 * 12 2 1 15 15 C 1.50697 * 109.47095 * 169.99991 * 14 12 2 16 16 C 1.34668 * 126.59383 * 264.68807 * 15 14 12 17 17 N 1.34130 * 108.01963 * 179.87537 * 16 15 14 18 18 C 1.30502 * 109.25524 * 0.40120 * 17 16 15 19 19 N 1.35042 * 108.69793 * 359.75236 * 18 17 16 20 20 H 0.97005 * 126.39181 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.46526 * 59.99912 * 1 2 3 22 22 H 1.08991 * 109.46937 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47190 * 300.00149 * 1 2 3 24 24 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46544 * 183.95424 * 13 12 2 26 26 H 1.09001 * 109.47272 * 303.95030 * 13 12 2 27 27 H 1.09000 * 109.47033 * 63.95479 * 13 12 2 28 28 H 1.08992 * 109.47062 * 290.00772 * 14 12 2 29 29 H 1.09003 * 109.46753 * 50.00460 * 14 12 2 30 30 H 1.08001 * 125.98644 * 0.02731 * 16 15 14 31 31 H 1.07998 * 125.64545 * 179.73135 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8064 -1.1210 4.0082 10 1 1.8269 -0.4200 5.2205 11 1 1.8258 -2.5202 4.0077 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0973 -2.4091 15 6 2.4775 -0.5162 -3.5794 16 6 3.6867 -0.1584 -4.0521 17 7 3.9739 -0.9483 -5.0973 18 6 2.9849 -1.7763 -5.2956 19 7 2.0304 -1.5402 -4.3700 20 1 1.1858 -2.0090 -4.2817 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7094 1.1617 3.4844 25 1 1.8665 -2.5520 -2.1649 26 1 1.6467 -2.5988 -0.3992 27 1 0.3556 -1.9520 -1.4400 28 1 0.6815 0.1054 -2.6087 29 1 2.1026 1.1189 -2.2603 30 1 4.3160 0.6254 -3.6570 31 1 2.9376 -2.5259 -6.0717 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379381045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:38 Heat of formation + Delta-G solvation = 45.374269 kcal Electronic energy + Delta-G solvation = -13825.735760 eV Core-core repulsion = 11528.587456 eV Total energy + Delta-G solvation = -2297.148304 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.89263 -38.89770 -34.91420 -33.33845 -31.92244 -30.02730 -27.77610 -27.24249 -25.11602 -22.40718 -21.79016 -21.13180 -18.70636 -18.11230 -17.10665 -16.38568 -15.68380 -15.48022 -15.30283 -14.78559 -14.32257 -14.30272 -13.89184 -13.36403 -12.94863 -12.84390 -12.61509 -12.52395 -12.35360 -12.06020 -11.79733 -10.98947 -10.90886 -10.86742 -10.48411 -9.33032 -8.86044 -8.10484 -6.21211 1.16424 1.43201 1.44808 1.52224 2.26190 2.33817 2.44122 3.18633 3.51642 3.86363 4.07393 4.21372 4.46155 4.62111 4.65177 4.68424 4.80791 4.82190 4.88119 5.11458 5.12184 5.35602 5.51761 5.70241 5.77645 5.83015 6.19959 6.45751 6.61550 6.69956 6.91130 7.18486 7.47909 8.94988 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056507 B = 0.007417 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.398811 B = 3774.226835 C = 3896.216734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.011 0.989 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.543 5.543 13 C 0.041 3.959 14 C 0.130 3.870 15 C -0.006 4.006 16 C -0.038 4.038 17 N -0.536 5.536 18 C 0.192 3.808 19 N -0.559 5.559 20 H 0.430 0.570 21 H 0.028 0.972 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.164 0.836 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -5.205 -11.670 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.029 0.971 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.266 5.266 13 C -0.108 4.108 14 C 0.001 3.999 15 C -0.123 4.123 16 C -0.186 4.186 17 N -0.256 5.256 18 C -0.093 4.093 19 N -0.164 5.164 20 H 0.270 0.730 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.181 0.819 31 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.482 -5.072 -11.939 12.981 hybrid contribution -1.665 -0.286 1.528 2.277 sum -2.147 -5.357 -10.411 11.904 Atomic orbital electron populations 1.22210 0.99949 0.99391 1.00235 1.19082 0.90237 0.93039 0.86761 0.97136 1.21329 1.30634 1.12498 0.90999 0.92883 1.25638 0.95398 0.95803 1.01667 1.69986 1.37794 1.24036 1.24106 0.85640 0.78634 0.78717 0.78794 1.20096 1.20923 1.19701 1.62243 1.59392 1.03179 1.01808 1.22193 0.96377 0.90987 1.01229 1.20383 0.96504 0.96913 0.86079 1.21091 0.98204 0.95549 0.97419 1.22164 0.95783 1.03494 0.97138 1.70232 1.28164 1.08676 1.18560 1.25720 0.84879 1.01955 0.96707 1.43304 1.19643 1.28331 1.25105 0.72994 0.95299 0.94673 0.91995 0.92922 0.91988 0.92822 0.95621 0.93937 0.89625 0.81871 0.73532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.31 8.22 71.98 0.59 -6.72 16 2 C 0.22 10.59 2.31 44.17 0.10 10.70 16 3 H 0.01 0.59 7.93 -2.39 -0.02 0.57 16 4 C -0.52 -28.07 7.91 25.60 0.20 -27.86 16 5 H 0.05 2.91 7.12 -2.91 -0.02 2.89 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.03 11.32 21.45 0.24 -51.79 16 8 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.54 -22.30 4.69 -906.04 -4.25 -26.55 16 13 C 0.04 1.47 8.49 127.69 1.08 2.55 16 14 C 0.13 4.42 5.09 85.56 0.44 4.86 16 15 C -0.01 -0.19 5.94 40.95 0.24 0.06 16 16 C -0.04 -1.25 11.79 83.52 0.98 -0.27 16 17 N -0.54 -16.55 11.25 -200.31 -2.25 -18.81 16 18 C 0.19 4.26 13.04 180.26 2.35 6.61 16 19 N -0.56 -12.70 5.25 -186.50 -0.98 -13.68 16 20 H 0.43 7.14 8.81 -92.70 -0.82 6.32 16 21 H 0.03 1.16 6.91 -2.39 -0.02 1.14 16 22 H 0.03 1.55 6.41 -2.39 -0.02 1.53 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 24 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.06 1.91 6.43 -2.39 -0.02 1.90 16 26 H 0.05 2.17 6.76 -2.39 -0.02 2.16 16 27 H 0.03 0.87 6.46 -2.39 -0.02 0.85 16 28 H 0.04 1.35 7.06 -2.39 -0.02 1.33 16 29 H 0.09 2.99 7.93 -2.39 -0.02 2.97 16 30 H 0.16 5.18 8.06 -2.91 -0.02 5.16 16 31 H 0.25 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -64.42 253.80 1.54 -62.87 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.32 Total: 11.36 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 6.44 Total: -8.89 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -7.24 Total: -110.82 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.42 1.54 -62.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379381045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.248 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds